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Top Forums Shell Programming and Scripting running a looping script for all files in directory Post 302232616 by Annihilannic on Thursday 4th of September 2008 11:32:27 PM
Old 09-05-2008
Try this perhaps (untested):

Code:
for f in $(seq -f file%g 1 20)
do
    grep 'something' -w $f > new$f
    awk -v OFS='\t' '{ print $1,$15,$4,$4,$4,$4,$2,$3,$4,$4 }' new$f > new.new$f
    sed -e 's/[+-]/U0/2' -e 's/[+-]/0/2' -e 's/[+-]/0/2' -e 's/[+-]/0/2' -e 's/+/F/1' -e 's/-/R/2' -e 's/[+-]/../2' -e 's/chr//1' new.new$f > new.new.new$f
done

 

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GREP(1) 						      General Commands Manual							   GREP(1)

NAME
grep, g - search a file for a pattern SYNOPSIS
grep [ option ... ] pattern [ file ... ] g [ option ... ] pattern [ file ... ] DESCRIPTION
Grep searches the input files (standard input default) for lines that match the pattern, a regular expression as defined in regexp(7) with the addition of a newline character as an alternative (substitute for |) with lowest precedence. Normally, each line matching the pattern is `selected', and each selected line is copied to the standard output. The options are -c Print only a count of matching lines. -h Do not print file name tags (headers) with output lines. -e The following argument is taken as a pattern. This option makes it easy to specify patterns that might confuse argument parsing, such as -n. -i Ignore alphabetic case distinctions. The implementation folds into lower case all letters in the pattern and input before interpre- tation. Matched lines are printed in their original form. -l (ell) Print the names of files with selected lines; don't print the lines. -L Print the names of files with no selected lines; the converse of -l. -n Mark each printed line with its line number counted in its file. -s Produce no output, but return status. -v Reverse: print lines that do not match the pattern. -f The pattern argument is the name of a file containing regular expressions one per line. -b Don't buffer the output: write each output line as soon as it is discovered. Output lines are tagged by file name when there is more than one input file. (To force this tagging, include /dev/null as a file name argument.) Care should be taken when using the shell metacharacters $*[^|()= and newline in pattern; it is safest to enclose the entire expression in single quotes '...'. An expression starting with '*' will treat the rest of the expression as literal characters. G invokes grep with -n and forces tagging of output lines by file name. If no files are listed, it searches all files matching *.C *.b *.c *.h *.m *.cc *.java *.cgi *.pl *.py *.tex *.ms SOURCE
/src/cmd/grep /bin/g SEE ALSO
ed(1), awk(1), sed(1), sam(1), regexp(7) DIAGNOSTICS
Exit status is null if any lines are selected, or non-null when no lines are selected or an error occurs. GREP(1)
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