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Top Forums Shell Programming and Scripting What's going wrong with sort? Post 302231784 by Digby on Wednesday 3rd of September 2008 06:31:42 AM
Old 09-03-2008
Thanks for the input guys. You've given me a bit to work with.
I've decided to accept this is what sort does and have added space characters after the identifier in the list file to get the same sorting.

Quote:
Originally Posted by dennis.jacob
This is just normal behaviour of sort
This surprises me, mainly because of this...

daisy 1813>cat head.fps | awk '{print $1}' | sort -d
101m_lig1_frag1
101m_lig1_frag10
101m_lig1_frag11
101m_lig1_frag12
101m_lig1_frag13
101m_lig1_frag14
101m_lig1_frag15
101m_lig1_frag16
101m_lig1_frag17
101m_lig1_frag18

Why is a space character inbetween a '1' and a '2', and why can't you sort by just the first field? Smilie
 

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JOIN(1) 						      General Commands Manual							   JOIN(1)

NAME
join - relational database operator SYNOPSIS
join [ options ] file1 file2 DESCRIPTION
Join forms, on the standard output, a join of the two relations specified by the lines of file1 and file2. If file1 is `-', the standard input is used. File1 and file2 must be sorted in increasing ASCII collating sequence on the fields on which they are to be joined, normally the first in each line. There is one line in the output for each pair of lines in file1 and file2 that have identical join fields. The output line normally con- sists of the common field, then the rest of the line from file1, then the rest of the line from file2. Fields are normally separated by blank, tab or newline. In this case, multiple separators count as one, and leading separators are dis- carded. These options are recognized: -an In addition to the normal output, produce a line for each unpairable line in file n, where n is 1 or 2. -e s Replace empty output fields by string s. -jn m Join on the mth field of file n. If n is missing, use the mth field in each file. -o list Each output line comprises the fields specified in list, each element of which has the form n.m, where n is a file number and m is a field number. -tc Use character c as a separator (tab character). Every appearance of c in a line is significant. SEE ALSO
sort(1), comm(1), awk(1) BUGS
With default field separation, the collating sequence is that of sort -b; with -t, the sequence is that of a plain sort. The conventions of join, sort, comm, uniq, look and awk(1) are wildly incongruous. 7th Edition April 29, 1985 JOIN(1)
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