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Full Discussion: how to fetch substring from records into another file
Top Forums Shell Programming and Scripting how to fetch substring from records into another file Post 302222036 by smriti_shridhar on Wednesday 6th of August 2008 12:46:01 AM
Old 08-06-2008
Bug Thanks.. I want to add one more thing..
Thanks Jean It solved the issue but I want to add one more thing in the output..

I want the output to be

>bi|2138271|geb|AAC15885.1|precursor [Sambucus nigra] ( Region from 92-110 of x)
LWPCGTQRNQQWTFYTDD
>bi|2138271|geb|AAC15885.1|precursor [Sambucus nigra] ( Region from 20-132 of x)
SVGIQGIDYPSVSFNLAGAKSATWDFLRMPHDLVGEDNKYNDGEPITGNIIGRDGLCVDVRNGYDTDGTP
LQLWPCGTQRNQQWTFYTDDTIRSMGKCMTANGLSNGSNIMI

where x is the total alphabets of that record in FILE1 from where we have extracted the substring. And this x do not include the Header line(the one starting with '>')

Although I have changed the line -
printf("%s (%s-%s)\n", Header,"Region from " From[k,i], To[k,i]);
this has solved half of my problem but still I am not able to include the Total length.

Please help.
Last edited by smriti_shridhar; 08-06-2008 at 01:49 AM.. Reason: formating
 

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LEARN ABOUT DEBIAN

gchem3d

GCHEM3D(1)						       gnome-chemistry-utils							GCHEM3D(1)

NAME

       gchem3d - a small chemical viewer application

SYNOPSIS

       gchem3d [OPTION(S)...] [FILE...]

DESCRIPTION

       gchem3d is a small chemical viewer application, which can show several chemical file formats.

OPTIONS

       The following options are accepted:

       -b COLOR, --bgcolor=COLOR
	   Use the given color as background color.  COLOR can be one of "black" (default), "white", "#rrggbb" (don't forget to escape the "#"
	   character in the shell).

       -d MODEL, --display3d=MODEL
	   Choose how molecules are displayed.	MODEL can be one of "BallnStick" (default), "SpaceFill".

       -?, --help
	   Show application help options.

       --help-all, --help-*
	   Print all or just a group of help options. These options are not documented here. Instead see gtk-options(7) and gnome-options(7).

       -v, --version
	   Print gchem3d version information.

SEE ALSO

       gnome-options(7), gtk-options(7)

AUTHORS

       Jean Brefort <jean.brefort@normalesup.org>
	   Program author.

       Daniel Leidert <daniel.leidert@wgdd.de>
	   Manpage author.

COPYRIGHT

       Copyright (C) 2002-2007 Jean Brefort
       Copyright (C) 2004-2007 Daniel Leidert

       Permission is granted to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 or any
       later version published by the Free Software Foundation.

gcu 0.12				      $Date: 2009-03-19 10:53:47 +0100 (jeu. 19 mars 2009) $					GCHEM3D(1)
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