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Full Discussion: CSV File parse help in Perl
Top Forums Shell Programming and Scripting CSV File parse help in Perl Post 302179964 by lodey on Saturday 29th of March 2008 08:06:16 AM
Old 03-29-2008
CSV File parse help in Perl

Folks,

I have a bit of an issue trying to obtain some data from a csv file using PERL. I can sort the file and remove any duplicates leaving only 4 or 5 rows containing data. My problem is that the data contained in the original file contains a lot more columns and when I try ro run this script it finds that all the data is unique.

I have the following fields within the orignal file:
PROGRAM ID,OP,PROBE_CARD ,DEVREVSTEP,TEST_START,TESTER_ID

The data which I need to obtain and sort is within the op,probecard and tester_id fields.

How can I go about this?

The code that I use after manually deleting the fields that i do not require is as follows:

Code:
#!/usr/bin/perl -w
use strict;
my $csvfile = 'probecards.csv';
my $newfile = 'sorted.csv';
my $fieldnames = 1;
open (IN, "<$csvfile")  or die "Couldn't open input CSV file: $!";
open (OUT, ">$newfile") or die "Couldn't open output file: $!";
my $header;
$header = <IN> if $fieldnames;
my @data = sort <IN>;
print OUT $header;
my $n = 0;
my $lastline = '';
foreach my $currentline (@data) {
  next if $currentline eq $lastline;
  print OUT $currentline;
  $lastline = $currentline;
  $n++;
}
close IN; close OUT;
print "Processing complete. In = " . scalar @data . " records, Out = $n records\n";

Sample CSV File:
Code:
Original File:

PROGRAM	ID	OP	PROBE_CARD	DEVREVSTEP	TEST_START	TESTER_ID
12630M196	139	2660	S25E3N36	88BCRA	16/03/2008 12:05	IN01
12630M196	1	2660	S25E3N36	88BLBHD	16/03/2008 13:04	IN04
12630M196	508	2660	S25E3N36	88BCRA	16/03/2008 13:41	IN01
12630M196	437	2660	S25E3N36	88CLNHC	16/03/2008 14:18	IN01
12630M196	465	2660	S25E3N36	88BCRA	16/03/2008 15:34	IN02
12630M196	27	2660	S25E3N36	88BCRA	16/03/2008 18:00	IN01
12630M196	18	2660	S25E3N36	88BCRA	16/03/2008 19:03	IN03


Output:

OPERATION PROBE_CARD_ID	TESTER_ID
2660	S25E3N21	IN04
2660	S25E3N27	IN02
2660	S25E3N36	IN01
2660	S25E3N39	IN03
2660	S25E3N40	IN04

Any pointers on how I could go about this would be greatly appreciated..

Rgds

Colin
 

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csv(n)								  CSV processing							    csv(n)

NAME
csv - Procedures to handle CSV data. SYNOPSIS
package require Tcl 8.3 package require csv ?0.3? ::csv::join values {sepChar ,} ::csv::joinlist values {sepChar ,} ::csv::read2matrix chan m {sepChar ,} {expand none} ::csv::read2queue chan q {sepChar ,} ::csv::report cmd matrix ?chan? ::csv::split line {sepChar ,} ::csv::split2matrix m line {sepChar ,} {expand none} ::csv::split2queue q line {sepChar ,} ::csv::writematrix m chan {sepChar ,} ::csv::writequeue q chan {sepChar ,} DESCRIPTION
The csv package provides commands to manipulate information in CSV FORMAT (CSV = Comma Separated Values). COMMANDS
The following commands are available: ::csv::join values {sepChar ,} Takes a list of values and returns a string in CSV format containing these values. The separator character can be defined by the caller, but this is optional. The default is ",". ::csv::joinlist values {sepChar ,} Takes a list of lists of values and returns a string in CSV format containing these values. The separator character can be defined by the caller, but this is optional. The default is ",". Each element of the outer list is considered a record, these are separated by newlines in the result. The elements of each record are formatted as usual (via ::csv::join). ::csv::read2matrix chan m {sepChar ,} {expand none} A wrapper around ::csv::split2matrix (see below) reading CSV-formatted lines from the specified channel (until EOF) and adding them to the given matrix. For an explanation of the expand argument see ::csv::split2matrix. ::csv::read2queue chan q {sepChar ,} A wrapper around ::csv::split2queue (see below) reading CSV-formatted lines from the specified channel (until EOF) and adding them to the given queue. ::csv::report cmd matrix ?chan? A report command which can be used by the matrix methods format 2string and format 2chan. For the latter this command delegates the work to ::csv::writematrix. cmd is expected to be either printmatrix or printmatrix2channel. The channel argument, chan, has to be present for the latter and must not be present for the first. ::csv::split line {sepChar ,} converts a line in CSV format into a list of the values contained in the line. The character used to separate the values from each other can be defined by the caller, via sepChar, but this is optional. The default is ",". ::csv::split2matrix m line {sepChar ,} {expand none} The same as ::csv::split, but appends the resulting list as a new row to the matrix m, using the method add row. The expansion mode specified via expand determines how the command handles a matrix with less columns than contained in line. The allowed modes are: none This is the default mode. In this mode it is the responsibility of the caller to ensure that the matrix has enough columns to contain the full line. If there are not enough columns the list of values is silently truncated at the end to fit. empty In this mode the command expands an empty matrix to hold all columns of the specified line, but goes no further. The overall effect is that the first of a series of lines determines the number of columns in the matrix and all following lines are truncated to that size, as if mode none was set. auto In this mode the command expands the matrix as needed to hold all columns contained in line. The overall effect is that after adding a series of lines the matrix will have enough columns to hold all columns of the longest line encountered so far. ::csv::split2queue q line {sepChar ,} The same as ::csv::split, but appending the resulting list as a single item to the queue q, using the method put. ::csv::writematrix m chan {sepChar ,} A wrapper around ::csv::join taking all rows in the matrix m and writing them CSV formatted into the channel chan. ::csv::writequeue q chan {sepChar ,} A wrapper around ::csv::join taking all items in the queue q (assumes that they are lists) and writing them CSV formatted into the channel chan. FORMAT
Each record of a csv file (comma-separated values, as exported e.g. by Excel) is a set of ASCII values separated by ",". For other lan- guages it may be ";" however, although this is not important for this case (The functions provided here allow any separator character). If a value contains itself the separator ",", then it (the value) is put between "". If a value contains ", it is replaced by "". EXAMPLE
The record 123,"123,521.2","Mary says ""Hello, I am Mary""" is parsed as follows: a) 123 b) 123,521.2 c) Mary says "Hello, I am Mary" SEE ALSO
matrix, queue KEYWORDS
csv, matrix, queue, package, tcllib csv 0.3 csv(n)
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