$sent1="Transactivation of wound-responsive genes containing the core sequence of the auxin-responsive element by a wound-induced protein kinase-activated transcription factor in tobacco plants.";
$sent2="I branching formation in erythroid differentiation is regulated by transcription factor.";
$query="transcription factor";(as a phrase)
I want to match $query.
I tried using regular expression but it is not working.I gave like this:-
I have a value
VAL=XXXX_20061001_00 XXXX_20061001_03 XXXX_20061001_00 XXXX_20061002_00 XXXX_20061002_03 XXXX_20061003_00
The VAL has duplicates like XXXX_20061001_00 repeated twice.
How to make the VAL with unique values.
Thanks in advance. (6 Replies)
Ok i have an expect script that logs into an appliance kinda like a Cisco router, runs a command, and I need to get some calculation out of the output of that command. The reason I have to use an expect script is the data I am trying to harvest does not have an SNMP variable assigned to it.
I... (1 Reply)
I am converting a mysql database from myIsam to innodb. After dumping all databases to a file, I am trying to make modification:
sed s/ENGINE=MyISAM/ENGINE=InnoDB/ dump_1 > dump_1_inno
however, when I import the modified dump file to mysql server, I got error:
ERROR 1214 (HY000) at line... (4 Replies)
I've got a script which finds *.txt files in directories and subdirectories after providing the path by the user and then searches in the files for phrase given by the user
How to write script in such way that the paths to the found *.txt files and the phrase given by the user were both... (2 Replies)
I have data that looks like this:
2002 140 40800.0060 GPS 20 C1 25477810.2305
2002 140 41100.0060 GPS 20 C1 25298056.0453
I need to get data after certain pattern.. for example if i search for C1
it should return
25477810.2305
25298056.0453
To achieve this, it should:
... (3 Replies)
Hello,
I am trying to print lines from a text file using this command
gawk '/Filename:/' 11.rtf >> 22.rtf
and it work ok.
but if the phrase has included forward (/) something like that
gawk '/File/name:/' 11.rtf >> 22.rtf
it give error . so is there any manipulation when it... (1 Reply)
Here is my file:
700 7912345678910
61234567891234567891
700 8012345678910
61234567891234567891
I want to pull all lines that begin with '700' only if columns 11-12 are '79'.
My code so far only pulls the '79', not the whole line:
grep ^700 file1 | cut -c 11,12 |... (7 Replies)
I want to burst a report by using the page number value in the report header. Each section starts with *PAGE NO:* 1 Each section might have several pages, but the next section always starts back at 1.
So I want to find the "*PAGE NO:* 1" value and pull all lines that follow until "*PAGE NO:* 1"... (4 Replies)
Discussion started by: Scottie1954
4 Replies
LEARN ABOUT DEBIAN
ace::graphics::glyph::transcript
Ace::Graphics::Glyph::transcript(3pm) User Contributed Perl Documentation Ace::Graphics::Glyph::transcript(3pm)NAME
Ace::Graphics::Glyph::transcript - The "gene" glyph
SYNOPSIS
See L<Ace::Graphics::Panel> and L<Ace::Graphics::Glyph>.
DESCRIPTION
This glyph draws a series of filled rectangles connected by up-angled connectors or "hats". The rectangles indicate exons; the hats are
introns. The direction of transcription is indicated by a small arrow at the end of the glyph, rightward for the + strand.
The feature must respond to the exons() and optionally introns() methods, or it will default to the generic display. Implied introns (not
returned by the introns() method) are drawn in a contrasting color to explicit introns.
OPTIONS
In addition to the common options, the following glyph-specific option is recognized:
Option Description Default
------------------------
-implied_intron_color The color to use for gaps gray
not returned by the introns()
method.
-draw_arrow Whether to draw arrowhead true
indicating direction of
transcription.
BUGS
Please report them.
SEE ALSO
Ace::Sequence, Ace::Sequence::Feature, Ace::Graphics::Panel, Ace::Graphics::Track, Ace::Graphics::Glyph::anchored_arrow,
Ace::Graphics::Glyph::arrow, Ace::Graphics::Glyph::box, Ace::Graphics::Glyph::primers, Ace::Graphics::Glyph::segments,
Ace::Graphics::Glyph::toomany, Ace::Graphics::Glyph::transcript,
AUTHOR
Lincoln Stein <lstein@cshl.org>.
Copyright (c) 2001 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
perl v5.14.2 2001-05-22 Ace::Graphics::Glyph::transcript(3pm)