07-17-2007
working with files
Hi All,
Can u plz tell me how to ensure row count.
input file /app/PNYCOINF01/opera/operaprd/Data/SENTRY_BSL2_COLLRECEIVEPOS_AM_20070716.dat
checkFile: The input file exists
checkFile: Checking for existing copy of output file /app/PNYCOINF01/opera/operaprd/SrcFiles/AMS/SENTRY_BSL2_COLLRECEIVEPOS_AM_20070716.dat
checkFile: There are no existing copies of the output file
checkFile: Checking the first 1 lines of the file for "20070716"
checkFile: Passed the header check
checkFile: Checking the line count appears in the footer
checkFile: The total number of rows of data in the file is 631
checkFile: Checking 631 appears in the 1 lines of the footer
checkFile: Failed to find the correct row count in the file.
checkFile: EXITING DUE TO ERRORS Mon Jul 16 23:37:02 EDT 2007
What i checked is
wc -l SENTRY_BSL2_COLLRECEIVEPOS_AM_20070716.dat
632
opened the file checked the last line which was footer it is currently showing 630 as count. It may be, after some change taken place in file by our manager, i just wanted to understand what was the change took place.
i am thinking that either deletion or addition of one emptyline into file may be done. if it is true, where did he add or delete it if not can u plz advise me for further.
thanks in advance..
-bali
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LEARN ABOUT DEBIAN
unknown
UNKNOWN(1) General Commands Manual UNKNOWN(1)
NAME
unknown - identify possible genotypes for unknowns
SYNOPSIS
A program to rapidly identify which genotypes are possible for individuals typed as unknowns in the input pedigree.
unknown [ -cl ]
DESCRIPTION
unknown infers possible genotypes and mating combinations for parents with unknown genotypes for ilink(1), mlink(1) and linkmap(1).
OPTIONS
-c Use conditional allele frequencies.
-l Choose a good set of loop breakers automatically.
RETURN VALUE
0 Successful completion
ERRORS
10 File not found
255 Failure
EXAMPLES
Normally, unknown(1) is run immediately prior to its sister programs, ilink(1), mlink(1) and linkmap(1), like this:
unknown
mlink
FILES
unknown(1) reads the two files pedfile.dat and datafile.dat as its own input and produces various temporary files that are used as input to
the next program. These temporary files are ipedfile.dat, upedfile.dat, speedfile.dat and newspeedfile.dat.
NOTES
unknown(1) is part of the FASTLINK package, which is a re-implementation of the LINKAGE suite of computer tools that help investigate
genetic linkage as first proposed G.M. Lathrop, J.M. Lalouel, C. Julier, and J. Ott.
AUTHORS
Dylan Cooper, Alejandro Schaffer, and Tony Schurtz based on work originally by Jurg Ott, Ph.D, et. al.
This manual page was written by Elizabeth Barham <lizzy@soggytrousers.net> for the Debian GNU/Linux system (but may be used by others).
WORD-WIDE-WEB
http://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html
SEE ALSO
ilink(1), linkmap(1), lodscore(1), mlink(1).
April 15, 2003 UNKNOWN(1)