1) I am moving, I messed up on the comment.
2) I have quote mixes left over from trying all different combinations of things to get it to work. So there is absolutely no difference?
3) I had the quotes there because this is where my error is being reported. Here is the error.
When I execute following shell script I am getting the following error
syntax error at line 50 : `<<' unmatched
What am I doing wrong :confused:
Script begins here
----------------
MPAN_FILE=$1
exec 3<$MPAN_FILE ... (2 Replies)
Does anyone see anything wrong with this.
#getInfraFiles()
#{
# cd Infra/$DAY
# rm *
# /usr/bin/ftp -i -n $LINE << cmd
# user "$USER" "$PASSWD"
# cd $INFRAPATH
# binary
# mget *
# bye
#}
besides that its commented out (4 Replies)
Hello,
I have a simple script such as
-----------------------------
#! /bin/sh
YEAR=`date -u +%Y`;
MONTH=`date -u +%m`;
DAY=`date -u +%d`;
DATE=$MONTH$DAY$YEAR
LOGFILES=auditTrail-$DATE
LOGMATCH=$LOGFILES\*
ARGUM=''
# find all files and write them to a file
find . -name... (7 Replies)
when user select option 2 nothing happen.for testing purpose I put
echo command but is not executing .
basically when user prompt for option 2,I want to get list of database name from user separeted by space (TEST DEVL)
and put into the file seprated by new line
TEST
DEVL
after that stay on... (1 Reply)
For one of my script, I want one extra parameter needs to be added to one of the Usage option. Below its given
#Check Input parameters are valid
if ; then
function usage() {
echo
echo "*******************************************"
echo " !!! USAGE... (2 Replies)
I am working on a simple login ID check shell script that should prompt for a user ID then check to see if this user is logged on. Trying to get the hang of this stuff so I am thinking of my own little projects.
#! /bin/sh
echo "please enter a user name"
read user
if user=$user
then... (3 Replies)
Hi ! all I am just trying to check range in my datafile
pls tell me why its resulting wrong
admin@IEEE:~/Desktop$ cat test.txt
0 28.4
5 28.4
10 28.4
15 28.5
20 28.5
25 28.6
30 28.6
35 28.7
40 28.7
45 28.7
50 28.8
55 28.8
60 28.8
65 28.1... (2 Replies)
Discussion started by: Akshay Hegde
2 Replies
LEARN ABOUT DEBIAN
bio::map::linkagemap
Bio::Map::LinkageMap(3pm) User Contributed Perl Documentation Bio::Map::LinkageMap(3pm)NAME
Bio::Map::LinkageMap - A representation of a genetic linkage map.
SYNOPSIS
use Bio::Map::LinkageMap;
# create a new map
my $map = Bio::Map::LinkageMap->new(-name => 'Chads Superterriffic Map',
-type => 'Linkage',
-units=> 'cM');
# create the location of a marker for that map
my $position = Bio::Map::LinkagePosition->new( -positions => 1,
-distance => "22.3");
# create a marker and place it at that position
my $marker = Bio::Map::Marker::Microsatellite->new(
-name => 'SuuuperMarker',
-position => $position);
# place that marker on that map
$map->add_element($marker);
# done!
DESCRIPTION
This object describes the basic functionality of a genetic linkage map in Bioperl. Each 'position' can have one or more markers that map
some number of units from the markers at the previous position.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Chad Matsalla
Email bioinformatics1@dieselwurks.com
CONTRIBUTORS
Lincoln Stein lstein@cshl.org Heikki Lehvaslaiho heikki-at-bioperl-dot-org Jason Stajich jason@bioperl.org Sendu Bala
bix@sendu.me.uk
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new
Title : new
Usage : my $linkage_map = Bio::Map::LinkageMap->new();
Function: Builds a new Bio::Map::LinkageMap object
Returns : Bio::Map::LinkageMap
Args : -name => the name of the map (string) [optional]
-type => the type of this map (string, defaults to Linkage) [optional]
-species => species for this map (Bio::Species) [optional]
-units => the map units (string, defaults to cM) [optional]
-elements=> elements to initialize with
(arrayref of Bio::Map::MappableI objects) [optional]
-uid => Unique ID of this map
length
Title : length
Usage : my $length = $map->length();
Function: Retrieves the length of the map. In the case of a LinkageMap, the
length is the sum of all marker distances.
Returns : An integer representing the length of this LinkageMap. Will return
0 if length is not calculateable
Args : None.
add_element($marker)
Title : add_element($marker)
Usage : $map->add_element($marker)
Function: Add a Bio::Map::MappableI object to the Map
Returns : none
Args : Bio::Map::MappableI object
Notes : It is strongly recommended that you use a
Bio::Map::LinkagePosition as the position in any
Bio::Map::Mappable that you create to place on this
map. Using some other Bio::Map::Position might work but might
be unpredictable.
N.B. I've added Bio::Map::OrderedPosition which should achieve
similar things from LinkagePosition and will work for
RH markers too.
perl v5.14.2 2012-03-02 Bio::Map::LinkageMap(3pm)