Hi, I have several files with same filename pattern. I want to calculate count of individual files using grep/egrep. Let me be more descriptive
In directory E1 i have files like
ab_20091201_12:24 ab_20091201_03:24 cd_20091201_04:16 cd_20091203_08:34 ef_20091201_06:12 ef_20091201
Now i want... (3 Replies)
Hello,
I have a text file with n lines in the following format (9 column fields):
Example:
contig00012 149606 G C 49 68 60 18 c$cccccacccccccccc^c
I need to count the number of lower-case and upper-case occurences in column 9, respectively, of the... (3 Replies)
When parsing multiple fields in a file using AWK, how do you group by one of the fields and parse by delimiters?
to clarify
If a file had
tom | 223-2222-4444 , randofield
ivan | 123-2422-4444 , random filed
... | and , are the delimiters ...
How would you group by the social security... (4 Replies)
Hi Gurus,
I'm scratching my head over and over and couldn't find the the right way to compose this AWK properly - PLEASE HELP :confused:
Input:
c,d,e,CLICK
a,b,c,CLICK
a,b,c,CONV
c,d,e,CLICK
a,b,c,CLICK
a,b,c,CLICK
a,b,c,CONV
b,c,d,CLICK
c,d,e,CLICK
c,d,e,CLICK
b,c,d,CONV... (6 Replies)
Hi,
let's say an input looks like:
A|C|C|D
A|C|I|E
A|B|I|C
A|T|I|B
as the title of the thread explains, I am trying to get something like:
1|A=4
2|C=2|B=1|T=1
3|I=3|C=1
4|D=1|E=1|C=1|B=1
i.e. a count of every character in each field (first column of output) independently, sorted... (4 Replies)
I am trying to confirm the counts from another code and tried the below awk, but the syntax is incorrect. Basically, outputting the counts of each condition in $8. Thank you :)
awk '$8==/TYPE=snp/ /TYPE=ins/ /TYPE=del/ {count++} END{print count}'... (6 Replies)
Hi Folks,
I have a file with fields as follows which has last field in multiple lines. I would like to combine a line which has three fields with single field line for as shown in expected output. Please help.
INPUT
hname01 windows appnamec1eda_p1, ... (5 Replies)
I am trying to remove all the lines and spaces where the count in $4 or $5 is greater than 1 (more than 1 letter). The file and the output are tab-delimited. Thank you :).
file
X 5811530 . G C NLGN4X
17 10544696 . GA G MYH3
9 96439004 . C ... (1 Reply)
The below awk executes as is and produces the current output. It isvery close but what Ican not seem to do is add the -exon..., the ... portion comes from $1 and the _exon is static and will never change. If there is + sign in $4 then the ... is in acending order or sequential. If there is a - in... (2 Replies)
Hi,
Sure it's an easy one, but it drives me insane.
input ("|" separated):
1|A,B,C,A
2|A,D,D
3|A,B,B
I would like to count the occurence of each capital letters in $2 across the entire file, knowing that duplicates in each record count as 1.
I am trying to get this output... (5 Replies)
Discussion started by: beca123456
5 Replies
LEARN ABOUT MINIX
zgrep
ZGREP(1) General Commands Manual ZGREP(1)NAME
zgrep - search possibly compressed files for a regular expression
SYNOPSIS
zgrep [ grep_options ] [ -e ] pattern filename...
DESCRIPTION
Zgrep invokes grep on compressed or gzipped files. These grep options will cause zgrep to terminate with an error code:
(-[drRzZ]|--di*|--exc*|--inc*|--rec*|--nu*). All other options specified are passed directly to grep. If no file is specified, then the
standard input is decompressed if necessary and fed to grep. Otherwise the given files are uncompressed if necessary and fed to grep.
If the GREP environment variable is set, zgrep uses it as the grep program to be invoked.
EXIT CODE
2 - An option that is not supported was specified.
AUTHOR
Charles Levert (charles@comm.polymtl.ca)
SEE ALSO grep(1), gzexe(1), gzip(1), zdiff(1), zforce(1), zmore(1), znew(1)ZGREP(1)