02-09-2007
Yeah tht is what it was...the guy who was sending these files wasnt taking care of spaces and the MF program was putting junk in place of these spaces.
He sent another file and the commands worked fine on them. Thanks for your help guys!
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LEARN ABOUT DEBIAN
fastaoverlap
EXONERATE(1) General Commands Manual EXONERATE(1)
NAME
exonerate - suite for investigating DNA and RNA sequence similarities
SYNOPSIS
exonerate-client [--help]
exonerate-server [--help]
fasta2esd [--help]
fastaannotatecdna [--help]
fastachecksum [--help]
fastaclean [--help]
fastaclip [--help]
fastacomposition [--help]
fastadiff [--help]
fastaexplode [--help]
fastafetch [--help]
fastahardmask [--help]
fastaindex [--help]
fastalength [--help]
fastanrdb [--help]
fastaoverlap [--help]
fastareformat [--help]
fastaremove [--help]
fastarevcomp [--help]
fastasoftmask [--help]
fastasort [--help]
fastasplit [--help]
fastasubseq [--help]
fastatranslate [--help]
fastavalidcds [--help]
DESCRIPTION
These programs are not described by the upstream author, however, some information is available via the --help and -h arguments for all
these programs. Whoever is using any of these programs in routine, is requested to provide a seed of a respective man page to the upstream
author.
OPTIONS
-h, --help Show summary of options.
-v, --version
Show version of program.
SEE ALSO
http://www.ebi.ac.uk/~guy/exonerate/
The author of this package provides a beginner ( http://www.ebi.ac.uk/~guy/exonerate/beginner.html ) and and avanced
http://www.ebi.ac.uk/~guy/exonerate/advanced.html ) tutorial on his web pages.
AUTHOR
exonerate was written by Guy Slater <guy@ebi.ac.uk>.
This manual page was written by Steffen Moeller for the Debian project (but may be used by others).
30 Jun 2007 EXONERATE(1)