02-03-2007
i think awk will help you out.... you can use printf to format the report
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LEARN ABOUT DEBIAN
bio::tools::eutilities::query::globalquery
Bio::Tools::EUtilities::Query::GlobalQuery(3pm) User Contributed Perl Documentation Bio::Tools::EUtilities::Query::GlobalQuery(3pm)
NAME
Bio::Tools::EUtilities::Query::GlobalQuery - container class for egquery data
SYNOPSIS
#### should not create instance directly; Bio::Tools::EUtilities does this ####
my $parser = Bio::Tools::EUtilities->new(-eutil => 'egquery',
-term => 'BRCA1');
# $gquery is a Bio::Tools::EUtilities::Query::GlobalQuery
while (my $gquery = $parser->next_GlobalQuery) {
print $gquery->to_string."
"; # stringify
print "DB:".$gquery->get_db." ".$gquery->get_count;
}
DESCRIPTION
This is a simple container class for egquery data. Currently this just contains various accessors for the data, such as get_database(),
get_count(), etc. for each item in a global query.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@lists.open-bio.org - General discussion
http://www.bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web.
https://redmine.open-bio.org/projects/bioperl/
AUTHOR
Email cjfields at bioperl dot org
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
get_term
Title : get_term
Usage : $st = $qd->get_term;
Function: retrieve the term for the global search
Returns : string
Args : none
get_database
Title : get_database
Usage : $ct = $qd->get_database;
Function: retrieve the database
Returns : string
Args : none
get_count
Title : get_count
Usage : $ct = $qd->get_count;
Function: retrieve the count for the database
Returns : string
Args : none
get_status
Title : get_status
Usage : $st = $qd->get_status;
Function: retrieve the query status for database in db()
Returns : string
Args : none
get_menu_name
Title : get_menu_name
Usage : $ct = $qd->get_menu_name;
Function: retrieve the full name for the database in db()
Returns : string
Args : None
to_string
Title : to_string
Usage : $foo->to_string()
Function : converts current object to string
Returns : none
Args : (optional) simple data for text formatting
Note : Used generally for debugging and for the print_GlobalQuery method
perl v5.14.2 2012-03-02 Bio::Tools::EUtilities::Query::GlobalQuery(3pm)