11-20-2006
regarding delete command in unix
Hai
This is the format from which i want to delete the 2nd column and i have to replace it with numbers starting from 1. this file contains 1000 lines of the below format.
ATOM 131 N ASN I 19 13.270 -37.510 4.242 1.00 57.52
ATOM 132 CA ASN I 19 11.912 -37.066 4.598 1.00 57.72
plz let me know the command in unix in command mode.
Regards
suneetha.
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LEARN ABOUT DEBIAN
asn2xml
ASN2XML(1) NCBI Tools User's Manual ASN2XML(1)
NAME
asn2xml - translate biological data from ASN.1 to XML
SYNOPSIS
asn2xml [-] [-b F] [-e] [-i filename] [-l filename] [-o filename] [-s]
DESCRIPTION
asn2xml converts an NCBI Seq-entry or Bioseq-set from ASN.1 format to an isomorphic XML representation. It differs from asn2asn -x in that
it converts packed sequence data back into human-readable ASCII text.
OPTIONS
A summary of options is included below.
- Print usage message
-b F Input asnfile in text mode
-e Input is a Seq-entry
-i filename
Read ASN.1 from filename (default is stdin)
-l filename
Log errors to filename (default is stderr)
-o filename
Write XML to filename (default is stdout)
-s Input is a Seq-submit
AUTHOR
The National Center for Biotechnology Information.
SEE ALSO
asn2all(1), asn2asn(1), asn2ff(1), asn2fsa(1), asn2gb(1), asndhuff(1), gene2xml(1), /usr/share/doc/ncbi-tools-bin/README.asn2xml,
/usr/share/doc/libncbi6/ncbixml.txt.gz
NCBI
2005-05-16 ASN2XML(1)