08-26-2002
to see the list of commands in unix/linux
hit tab twice after typing in the first letter of the commnad
for ex. a<tab><tab>
10 More Discussions You Might Find Interesting
1. UNIX for Dummies Questions & Answers
hi, I'm completely new to FreeBds or unix in general, is there a really nice site to teach you the basic ommands to free BSD.
I don't know what to do. =( (3 Replies)
Discussion started by: Special K
3 Replies
2. Shell Programming and Scripting
anyone know the command to display the ten most common words, together with their number of occurences, in the manual entry for the ls command. It would be much useful (1 Reply)
Discussion started by: master_6ez
1 Replies
3. Programming
Hello all,
i've written a small piece of code that will read commands from standard input and executes the commands.
Its working fine and is execting the commands well. Accepting arguments too. e.g
#mkdir <name of the directory>
The problem is that its not letting me change the directory i.e... (4 Replies)
Discussion started by: Phrozen Smoke
4 Replies
4. Shell Programming and Scripting
I want to log into a remote server transfer over a new config and then backup the existing config, replace with the new config.
I am not sure if I can do this with BASH scripting.
I have set up password less login by adding my public key to authorized_keys file, it works.
I am a little... (1 Reply)
Discussion started by: bash_in_my_head
1 Replies
5. AIX
Hi all,
I'm new in this forum.
I'm looking for the difference between the HACMP commands with the prefix "cl" and "cli".
The first type are under /usr/es/sbin/cluster/sbin directory and the second are under /usr/es/sbin/cluster/cspoc directory.
I know that the first are called HACMP for AIX... (0 Replies)
Discussion started by: peppix
0 Replies
6. UNIX for Dummies Questions & Answers
Hi!
i'd like from someone to explain me 'what is what' from these parts of code if it's possible.i'd like to understand them and their usage:
1)
sed '3d' filename
2)
sort –t: +0 -1 /etc/passwd
and also this:
tr ‘’ ‘ ‘ < filename
thank you! (11 Replies)
Discussion started by: strawhatluffy
11 Replies
7. UNIX for Dummies Questions & Answers
I'm trying to figure out certain commands for these steps. If you wish to discuss with me in real time, PM me your AIM or MSN, thanks. Here are the steps.
Edit the readcal_final file
Delete all of the lines that comprise the colandar portion of the memo
Without leaving vi, open a new... (0 Replies)
Discussion started by: vgmaster9
0 Replies
8. UNIX for Dummies Questions & Answers
How can I find a list of shortcut commands I can execute within vi using the % indicator?
For example, I can vi a file, press colon, and then type "%s/\r//g" to remove all instances of a carriage return. What else can be executed from the % prompt and what are the shortcut letters (I could type... (4 Replies)
Discussion started by: MaindotC
4 Replies
9. Shell Programming and Scripting
So I need a way to list all files that contain 4 letters.
Also separately I need to find a way to list all files with l or n as the third letter of the name.
I need to use the ls command and/or grep/egrep.
Any help would be a appreciated. (2 Replies)
Discussion started by: muttfacejohnson
2 Replies
10. Homework & Coursework Questions
Use and complete the template provided. The entire template must be completed. If you don't, your post may be deleted!
1. The problem statement, all variables and given/known data:
If the user enters option 1, your program should display the list of entries in the current
directory. For... (1 Reply)
Discussion started by: UniverseCloud
1 Replies
LEARN ABOUT DEBIAN
cd-hit-para
CD-HIT-PARA.PL(1) User Commands CD-HIT-PARA.PL(1)
NAME
cd-hit-para.pl - divide a big clustering job into pieces to run cd-hit or cd-hit-est jobs
SYNOPSIS
cd-hit-para.pl options
DESCRIPTION
This script divide a big clustering job into pieces and submit jobs to remote computers over a network to make it parallel. After
all the jobs finished, the script merge the clustering results as if you just run a single cd-hit or cd-hit-est.
You can also use it to divide big jobs on a single computer if your computer does not have enough RAM (with -L option).
Requirements:
1 When run this script over a network, the directory where you
run the scripts and the input files must be available on all the remote hosts with identical path.
2 If you choose "ssh" to submit jobs, you have to have
passwordless ssh to any remote host, see ssh manual to know how to set up passwordless ssh.
3 I suggest to use queuing system instead of ssh,
I currently support PBS and SGE
4 cd-hit cd-hit-2d cd-hit-est cd-hit-est-2d
cd-hit-div cd-hit-div.pl must be in same directory where this script is in.
Options
-i input filename in fasta format, required
-o output filename, required
--P program, "cd-hit" or "cd-hit-est", default "cd-hit"
--B filename of list of hosts,
requred unless -Q or -L option is supplied
--L number of cpus on local computer, default 0
when you are not running it over a cluster, you can use this option to divide a big clustering jobs into small pieces, I suggest you
just use "--L 1" unless you have enough RAM for each cpu
--S Number of segments to split input DB into, default 64
--Q number of jobs to submit to queue queuing system, default 0
by default, the program use ssh mode to submit remote jobs
--T type of queuing system, "PBS", "SGE" are supported, default PBS
--R restart file, used after a crash of run
-h print this help
More cd-hit/cd-hit-est options can be speicified in command line
Questions, bugs, contact Weizhong Li at liwz@sdsc.edu
cd-hit-para.pl 4.6-2012-04-25 April 2012 CD-HIT-PARA.PL(1)