How to split a column based on |?


 
Thread Tools Search this Thread
Top Forums UNIX for Beginners Questions & Answers How to split a column based on |?
# 8  
Old 06-20-2017
Thank you! This worked like a charm!

Quote:
Originally Posted by Aia
Since gi and ref seems to be always there, perhaps another suggestion:
Code:
perl -pe 's/\|?(?:\s+gi|ref)?\|\s*/\t/g' file

Output:
Code:
TRINITY_DN17272_c0_g1_i1        242003970       XP_002422928.1  57.5    127     54      02382     65      191     1.2e-41 176.0

Login or Register to Ask a Question

Previous Thread | Next Thread

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

To Split the file based on column value

Hi Team, I have a requirement in such a way that need to split the file into two based on which column particular value appears.Please find my sample file below. Lets consider the delimiter of this file as either comma or two colons.(:: and ,). So I need to split the file in such a way that all... (2 Replies)
Discussion started by: ginrkf
2 Replies

2. UNIX for Dummies Questions & Answers

Split 1 column into numerous columns based on patterns

Hi, I have a text file 'Item_List.txt' containing only 1 column. This column lists different products, each separated by the same generic string header "NEW PRODUCT, VERSION 1.1". After this the name of the product is given, then a delimiter string "PRODUCT FIELD", and then the name of the... (11 Replies)
Discussion started by: mmab
11 Replies

3. Shell Programming and Scripting

Split file based on a column/field value

Hi All, I have a requirement to split file into 2 sets of file. Below is a sample data of the file AU;PTN;24EX;25-AUG-14;AU;123;SE;123;Test NN;;;;ASD; AU;PTN;24EX;25-AUG-14;AU;456;SE;456;Test NN;;;;ASD; AU;PTN;24EX;25-AUG-14;AU;147;SE;147;Test NN;;;;ASD;... (6 Replies)
Discussion started by: galaxy_rocky
6 Replies

4. Shell Programming and Scripting

awk to sum a column based on duplicate strings in another column and show split totals

Hi, I have a similar input format- A_1 2 B_0 4 A_1 1 B_2 5 A_4 1 and looking to print in this output format with headers. can you suggest in awk?awk because i am doing some pattern matching from parent file to print column 1 of my input using awk already.Thanks! letter number_of_letters... (5 Replies)
Discussion started by: prashob123
5 Replies

5. UNIX for Dummies Questions & Answers

Split file based on column

i have file1.txt asdas|csada|130310|0423|A1|canberra sdasd|sfdsf|130426|2328|A1|sydney Expected output : on eaceh third and fourth colum, split into each two characters asdas|csada|13|03|10|04|23|A1|canberra sdasd|sfdsf|13|04|26|23|28|A1|sydney (10 Replies)
Discussion started by: radius
10 Replies

6. Shell Programming and Scripting

Split the file based on column

Hi, I have a file sample_1.txt (300k rows) which has data like below: * Also each record is around 64k bytes 11|1|abc|102553|125589|64k bytes of data 10|2|def|123452|123356|...... 13|2|geh|144351|121123|... 25|4|fgh|165250|118890|.. 14|1|abc|186149|116657|......... (6 Replies)
Discussion started by: sol_nov
6 Replies

7. Shell Programming and Scripting

Split a file into multiple files based on line numbers and first column value

Hi All I have one query,say i have a requirement like the below code should be move to diffent files whose maximum lines can be of 10 lines.Say in the below example,it consist of 14 lines. This should be moved logically using the data in the fisrt coloumn to file1 and file 2.The data of first... (2 Replies)
Discussion started by: sarav.shan
2 Replies

8. Shell Programming and Scripting

How to split a fixed width text file into several ones based on a column value?

Hi, I have a fixed width text file without any header row. One of the columns contains a date in YYYYMMDD format. If the original file contains 3 dates, I want my shell script to split the file into 3 small files with data for each date. I am a newbie and need help doing this. (14 Replies)
Discussion started by: bhanja_trinanja
14 Replies

9. Shell Programming and Scripting

split the file based on the 2nd column passing as a parameter

I am unable to spit the file based on the 2nd column passing as a parameter with awk command. Source file: “100”,”customer information”,”10000” “200”,”customer information”,”50000” “300”,”product information”,”40000” script: the command is not allowing to pass the parameters with the awk... (7 Replies)
Discussion started by: number10
7 Replies

10. Shell Programming and Scripting

Split large file based on last digit from a column

Hello, What's the best way to split a large into multiple files based on the last digit in the first column. input file: f 2738483300000x0y03772748378831x1y13478378358383x2y23743878383802x3y33787828282820x4y43748838383881x5y5 Desired Output: f0 3738483300000x0y03787828282820x4y4 f1... (9 Replies)
Discussion started by: alain.kazan
9 Replies
Login or Register to Ask a Question
SPLIT(1)						    BSD General Commands Manual 						  SPLIT(1)

NAME
split -- split a file into pieces SYNOPSIS
split [-a suffix_length] [-b byte_count[k|m]] [-l line_count] [-p pattern] [file [name]] DESCRIPTION
The split utility reads the given file and breaks it up into files of 1000 lines each. If file is a single dash ('-') or absent, split reads from the standard input. The options are as follows: -a suffix_length Use suffix_length letters to form the suffix of the file name. -b byte_count[k|m] Create smaller files byte_count bytes in length. If ``k'' is appended to the number, the file is split into byte_count kilobyte pieces. If ``m'' is appended to the number, the file is split into byte_count megabyte pieces. -l line_count Create smaller files n lines in length. -p pattern The file is split whenever an input line matches pattern, which is interpreted as an extended regular expression. The matching line will be the first line of the next output file. This option is incompatible with the -b and -l options. If additional arguments are specified, the first is used as the name of the input file which is to be split. If a second additional argument is specified, it is used as a prefix for the names of the files into which the file is split. In this case, each file into which the file is split is named by the prefix followed by a lexically ordered suffix using suffix_length characters in the range ``a-z''. If -a is not speci- fied, two letters are used as the suffix. If the name argument is not specified, the file is split into lexically ordered files named with the prefix ``x'' and with suffixes as above. ENVIRONMENT
The LANG, LC_ALL, LC_CTYPE and LC_COLLATE environment variables affect the execution of split as described in environ(7). EXIT STATUS
The split utility exits 0 on success, and >0 if an error occurs. SEE ALSO
csplit(1), re_format(7) STANDARDS
The split utility conforms to IEEE Std 1003.1-2001 (``POSIX.1''). HISTORY
A split command appeared in Version 3 AT&T UNIX. BUGS
The maximum line length for matching patterns is 65536. BSD
August 21, 2005 BSD