10 More Discussions You Might Find Interesting
1. UNIX for Beginners Questions & Answers
Hello,
I have this table:
chr1_16857_17742 - chr1 17369 17436 "ENST00000619216.1"; "MIR6859-1"; - 67
chr1_16857_17742 - chr1 14404 29570 "ENST00000488147.1"; "WASH7P"; - 885
chr1_16857_18061 - chr1 ... (5 Replies)
Discussion started by: coppuca
5 Replies
2. Shell Programming and Scripting
Hi to all,
Please help on the following problem, I'm not where to begin, if awk or shell script.
I have pairs of ranges of numbers and I need to find the root or roots of ranges based on min Range and Max ranges
Example #1:
If min range is 120000 and max ranges 124999, it means that are... (5 Replies)
Discussion started by: Ophiuchus
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3. Shell Programming and Scripting
Gents,
I have a big file file like this.
5100010002
5100010004
5100010006
5100010008
5100010010
5100010012
5102010002
5102010004
5102010006
5102010008
5102010010
5102010012
The file is sorted and I would like to find the min and max value, taking in the consideration key1... (3 Replies)
Discussion started by: jiam912
3 Replies
4. Shell Programming and Scripting
aaa: 3 ms
aaa: 2 ms
aaa: 5 ms
aaa: 10 ms
..........
to get the 3 2 5 10 ...'s min avg and max
something like
min: 2 ms avg: 5 ms max: 10 ms (2 Replies)
Discussion started by: yanglei_fage
2 Replies
5. UNIX for Dummies Questions & Answers
Hi guys,
I already search on the forum but i can't solve this on my own.
I have a lot of files like this:
And i need to print the line with the maximum value in last column but if the value is the same (2 in this exemple for the 3 last lines) i need get the line with the minimum value in... (4 Replies)
Discussion started by: MetaBolic0
4 Replies
6. Shell Programming and Scripting
Hello Experts,
I have got a txt files which has multiple columns, I want to get the max, min and diff (max-min) for each column in the same txt file. Example:
cat file.txt
a 1 4
b 2 5
c 3 6
I want ouput like:
cat file.txt
a 1 4
b 2 5
c 3 6
Max 3 6
Min 1 4
Diff 2 2
awk 'min=="" ||... (4 Replies)
Discussion started by: dixits
4 Replies
7. Shell Programming and Scripting
Hi,
I have a text file containing numbers. There are up to 6 numbers per row and I need to read them, check if they are 0 and if they are not zero check if they are within a given interval (min,max). If they exceed the max or min they should be set to max or min respectively, if they are in the... (4 Replies)
Discussion started by: f_o_555
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8. UNIX for Dummies Questions & Answers
Hello,
I have 800 or so files with 3 columns each and >10000 lines each.
For each file and each line I would like to print the maximum column number for each line. Then I would like to 'paste' each of these files together (column-wise) so that the file with expression in label '_1' is the... (6 Replies)
Discussion started by: peanuts48
6 Replies
9. Shell Programming and Scripting
hi!
i have a file like the attachement.
I'd like to get for each line the min, max and average values. (there is 255 values for each line)
how can i get that ?
i try this, is it right?
BEGIN {FS = ","; OFS = ";";max=0;min=0;moy=0;total=0;freq=890}
$0 !~ /Trace1:/ {
... (1 Reply)
Discussion started by: riderman
1 Replies
10. Shell Programming and Scripting
We are running a AIX 5.2 OS.
Would anyone happen to know what the max value for a process id could be?
Thanks
jerardfjay :) (0 Replies)
Discussion started by: jerardfjay
0 Replies
RE-PCR(1) General Commands Manual RE-PCR(1)
NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS
-p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)
SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)
AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)