Node selection with bsub

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Bsub job does not execute the script

Hello, When I'm trying to send bsub job using script that executes fine in command line, I get nothing. I do this for testing purposes, and the script scr_test is just one line: pwd > outfile So when I'm executing it in command line: $ ./scr_test it works fine producing the outfile with...

2. Shell Programming and Scripting

How to create a variable without multiple concats in a perl scripts that makes a bsub?

The red text at the bottom represents the three lines I want to address. I'm dynamically creating a bsub with a perl script and would like to create the fasta_16S variable in a single line....not three. I'm having difficulty in getting the syntax correct. Obviously, there is some confusion...

3. UNIX for Dummies Questions & Answers

Bsub command

Hi everyone, I must write a Linux script for a biological analysis. I have an example for that which involves the "bsub" and "bsub-o" command, respectively. I cannot find a description for this command. Can you please help me?

4. HP-UX

Mount FIle systems from node-1 onto node-2

Hi, We have HP UX service guard cluster on OS 11.23. Recently 40+ LUNs presented to both nodes by SAN team but I was asked to mount them on only one node. I created required VGs/LVs, created VxFS and mounted all of them and they are working fine. Now client requested those FS on 2nd node as...

5. UNIX for Dummies Questions & Answers

Bsub array problem

I'm trying to run some computations on a cluster and have found that a bsub array is what I need.. So I tried running a simple example I found bsub -J "myArray" echo "Job \$LSB_JOBINDEX" This should create 10 jobs that output "Job 1" "Job 2" .. etc. But when I run this from afs space I get...

6. Homework & Coursework Questions

Accessing one UNIX node from another node of the same server

Hi Experts, I am in need of running a script from one node say node 1 via node 2. My scheduling tool dont have access to node2 , so i need to invoke the list file from node1 but the script needs to run from node2. because the server to which i am hitting, is having access only for the node...

7. UNIX for Dummies Questions & Answers

qsub equivalent of bsub command

"bsub -o /dev/null -P something -q normal -a optimize -n 1 -R \"rusage\ span\\" -J GUISETUP_${PID} \"dc_shell-t -f .dc_script_$job_index.tcl -output_log_file .dc_shell_$job_index.log \"" Can anybody please tell me the qsub equivalent for this command? ---------- Post updated at 06:48 AM...

8. Shell Programming and Scripting

Passing a variable to #BSUB -n in a LSF file

Hi There! I'm writing this LSF script to make it easier to send jobs to a cluster when varying certain parameters. At one point I'd like to do something like: set NPROC = 10 and later on call BSUB using something like: #BSUB -n $NPROC unfortunately for me, this throws an error: ...

9. Solaris

SVM metaset on 2 node Solaris cluster storage replicated to non-clustered Solaris node

Hi, Is it possible to have a Solaris cluster of 2 nodes at SITE-A using SVM and creating metaset using say 2 LUNs (on SAN). Then replicating these 2 LUNs to remote site SITE-B via storage based replication and then using these LUNs by importing them as a metaset on a server at SITE-B which is...

10. UNIX for Dummies Questions & Answers

Writing a script to work sequentially with bsub

Hi, I am REALLY a newbie of Unix: hope this question is not too odd. Here is my problem: I have to submit jobs to a remote platform (an IBM BCX/5120). To submit I have tobsub < filename.jcf and the .jcf file has usually the following content: #!/bin/bash #BSUB <commands of the bsub>...

LEARN ABOUT SUSE

ipcluster

IPCLUSTER(1)															      IPCLUSTER(1)

NAME

       ipcluster - IPython parallel computing cluster control tool

SYNOPSIS

       ipcluster {piexec,local,mpirun,pbs,ssh} [options]

DESCRIPTION

       ipcluster is a control tool for IPython's parallel computing functions.

       IPython	cluster  startup. This starts a controller and engines using various approaches. Use the IPYTHONDIR environment variable to change
       your IPython directory from the default of .ipython or _ipython. The log and security subdirectories of your IPython directory will be used
       by this script for log files and security files.

POSITIONAL ARGUMENTS

       The first positional argument should be one of: {mpiexec, local, mpirun, pbs, ssh}, which are the available cluster types.

       For detailed help on each, type "ipcluster TYPE --help". Briefly:

	 local	       run a local cluster
	 mpirun        run a cluster using mpirun (mpiexec also works)
	 mpiexec       run a cluster using mpiexec (mpirun also works)
	 pbs	       run a pbs cluster
	 ssh	       run a cluster using ssh, should have ssh-keys setup

OPTIONS

       -h, --help
	      show help message and exit

EXAMPLE

       ipcluster local -n 4

       This command will start 4 IPython engines on the local computer.

SEE ALSO

       ipython(1),ipcontroller(1),ipengine(1)

AUTHOR

       ipcluster is a tool that ships with IPython, created by the IPython Development Team.

       This  manual  page  was written by Stephan Peijnik <debian@sp.or.at>, for the Debian project (but may be used by others).  Modified by Fer-
       nando Perez <Fernando.Perez@berkeley.edu> for inclusion in IPython.

								 October 28, 2008						      IPCLUSTER(1)

Shell Programming and Scripting