I found and downloaded this hxxp://www.activestate.com/activeperl/downloads , but I am totally beginner about, what the way to use your script? Where can I input my files? Excuseme if I am asking really simple questions for you totally clear.
Save the snippet I posted as merge_xml.pl
Run at the command prompt as perl merge_xml.pl file1.xml file2.xml file3.xml > big.xml
This suggested code will accommodate as many files as you want to merge. It uses the following entries as unique ID
Hello,
My apologies if this has been posted elsewhere, I have had a look at several threads but I am still confused how to use these functions. I have two files, each with 5 columns:
File A: (tab-delimited)
PDB CHAIN Start End Fragment
1avq A 171 176 awyfan
1avq A 172 177 wyfany
1c7k A 2 7... (3 Replies)
Hi,
I have 20 tab delimited text files that have a common column (column 1). The files are named GSM1.txt through GSM20.txt. Each file has 3 columns (2 other columns in addition to the first common column).
I want to write a script to join the files by the first common column so that in the... (5 Replies)
I have file1.txt
BGE179W1
BGE179W2
BGE179W3
BGE187W1
BGE187W2
BGE187W3
BGE194W1
BGE194W2
BGE194W3
BGE227W1
BGE227W2
BGE227W3
BGE288W1
BGE288W2
BGE288W3
BGE650W1
---------- Post updated at 12:41 AM ---------- Previous update was at 12:39 AM ---------- (5 Replies)
Hello everybody,
I have a double mission with some XML files, which is pretty challenging for my actual beginner UNIX knowledge. I need to extract some strings from multiple XML files and create a new XML file with the searched strings..
The original XML files contain the source code for... (12 Replies)
Hi Everyone,
I'm new here and I was checking this old post:
/shell-programming-and-scripting/180669-splitting-file-into-several-smaller-files-using-perl.html
(cannot paste link because of lack of points)
I need to do something like this but understand very little of perl.
I also check... (4 Replies)
Hi,
I'm having a xml file with multiple xml header. so i want to split the file into multiple files.
Sample.xml consists multiple headers so how can we split these multiple headers into multiple files in unix.
eg :
<?xml version="1.0" encoding="UTF-8"?>
<ml:individual... (3 Replies)
Hi all,
I need help to parse this xml file that has paragraphs broken in different lines and I would like to join in a single line.
I hope you can understand my explanation. Thanks for any help/direction.
The script could be in bash, awk, ruby, perl whatever please
In the output I want:... (8 Replies)
Hello,
This post is already here but want to do this with another way
Merge multiples files with multiples duplicates keys by filling "NULL" the void columns for anothers joinning files
file1.csv:
1|abc
1|def
2|ghi
2|jkl
3|mno
3|pqr
file2.csv:
1|123|jojo
1|NULL|bibi... (2 Replies)
Discussion started by: yjacknewton
2 Replies
LEARN ABOUT DEBIAN
stag-grep
STAG-GREP(1p) User Contributed Perl Documentation STAG-GREP(1p)NAME
stag-grep - filters a stag file (xml, itext, sxpr) for nodes of interest
SYNOPSIS
stag-grep person -q name=fred file1.xml
stag-grep person 'sub {shift->get_name =~ /^A*/}' file1.xml
stag-grep -p My::Foo -w sxpr record 'sub{..}' file2
USAGE
stag-grep [-p|parser PARSER] [-w|writer WRITER] NODE -q tag=val FILE
stag-grep [-p|parser PARSER] [-w|writer WRITER] NODE SUB FILE
stag-grep [-p|parser PARSER] [-w|writer WRITER] NODE -f PERLFILE FILE
DESCRIPTION
parsers an input file using the specified parser (which may be a built in stag parser, such as xml) and filters the resulting stag tree
according to a user-supplied subroutine, writing out only the nodes/elements that pass the test.
the parser is event based, so it should be able to handle large files (although if the node you parse is large, it will take up more
memory)
ARGUMENTS
-p|parser FORMAT
FORMAT is one of xml, sxpr or itext, or the name of a perl module
xml assumed as default
-w|writer FORMAT
FORMAT is one of xml, sxpr or itext, or the name of a perl module
-c|count
prints the number of nodes that pass the test
-filterfile|f
a file containing a perl subroutine (in place of the SUB argument)
-q|query TAG1=VAL1 -q|query TAG2=VAL2 ... -q|query TAGN=VALN
filters based on the field TAG
other operators can be used too - eg <, <=, etc
multiple q arguments can be passed in
for more complex operations, pass in your own subroutine, see below
SUB a perl subroutine. this subroutine is evaluated evry time NODE is encountered - the stag object for NODE is passed into the subroutine.
if the subroutine passes, the node will be passed to the writer for display
NODE
the name of the node/element we are filtering on
FILE
the file to be parser. If no parser option is supplied, this is assumed to a be a stag compatible syntax (xml, sxpr or itext);
otherwise you should parse in a parser name or a parser module that throws stag events
SEE ALSO
Data::Stag
perl v5.10.0 2008-12-23 STAG-GREP(1p)