08-28-2013
no its doesnt work in fact doesnt change file at all thanks though
I have a feeling its about tabs
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LEARN ABOUT DEBIAN
go::model::evidence
GO::Model::Evidence(3pm) User Contributed Perl Documentation GO::Model::Evidence(3pm)
NAME
GO::Model::Evidence - evidence for an association
SYNOPSIS
my $ev_l = $association->evidence_list;
foreach my $ev (@$ev_l) {
print "Evidence for association %s : %s
",
$association->gene_product->symbol,
$ev->code;
}
DESCRIPTION
evidence for an association
see http://www.geneontology.org/GO.evidence.html for a list of evidence codes
code
Usage - $ev->code("IEA");
Returns -
Args -
gets/sets the evidence code
see http://www.geneontology.org/GO.evidence.html
seq_acc
Usage -
Returns -
Args -
gets/sets the sequence accesion GO::Model::Xref
ALPHA CODE - API may change
used to set the GO::Model::Xref list from a text string. eg
$ev->seq_acc("SGD:RRP41; SGDID:L0003550");
will actually add two GO::Model::Xref objects
This method doesnt really belong in the GO::Model::* hierarchy as it contains parsing code. Its a minor hack mainly due to the fact that
this data is still denormalized in the database.
add_seq_xref
Usage -
Returns -
Args -
equivalent to WITH column in gene_association files, and evidence_dbxref tables in db
add_pub_xref
Usage -
Returns -
Args -
xref
Usage -
Returns -
Args -
gets/sets the literature or sequence reference GO::Model::Xref
NOTE: at some point we may want to deprecate this method and persuade API client code to call
$ev->literature_xref
instead, to make explicit the fact that this is a literature reference as opposed to a sequence reference
xref_list
Usage -
Returns - GO::Model::Xref listref
Args -
returns all (sequence and literature) references
xref
Usage -
Returns -
Args -
deprected - sets first pub_xref_list
valid_codes
Usage - print join("; ", GO::Model::Evidence->valid_codes);
Returns - string array
Args -
list of valid evidence codes
perl v5.14.2 2013-02-07 GO::Model::Evidence(3pm)