I just built a new box to run Suse, and I guess I shoud have spent more time researching the HCL. Anyway, the Promise RAID card I have will not work, and I am unable to install the OS. The only other IDE devide in the box is a DVDOM.
I can only think of 2 options, but would appreciate some... (1 Reply)
Hi,
I am looking for basic shell script to feed Gnuplot with live data, to arrange basic animation.
I mean one-liner one variable real function.
Any idea or experiences from the past, generating Gnuplot animation on dumb terminal (ASCII only) ?
Or please refer me to a nice web site.
... (7 Replies)
I'm trying to understand if it's possible to create a set of variables that are numbered based on another variable (using eval) in a loop, and then call on it before the loop ends.
As an example I've written a script called question (The fist command is to show what is the contents of the... (2 Replies)
Hi Im running this script, which is supposed to find the max value build some tables and then stop running once all the tables are built. Thing is , it keeps assigning a null value to $h and then $g is null so it keep building tables i.e. testupdateNUL. How can I stop this? Here is what I have:
... (4 Replies)
Hi all
Sorry for the basic question, but i am writing a shell script to get around a slightly flaky binary that ships with one of our servers. This particular utility randomly generates the correct information and could work first time or may work on the 12th or 100th attempt etc !.... (4 Replies)
Hello All,
Maybe I'm Missing something here but I have NOOO idea what the heck is going on with this....?
I have a Variable that contains a PATTERN of what I'm considering "Illegal Characters". So what I'm doing is looping
through a string containing some of these "Illegal Characters". Now... (5 Replies)
Hi,
I want to read file multiple times. Right now i am using while loop but that is not working.
ex.
While read line
do
while read line2
do
echo stmt1
#processing some data based on data.,
done < file2.txt
done < file1.txt # This will have 10... (4 Replies)
Here's my code:
awk -F '' 'NR==FNR {
if (/time/ && $5>10)
A=$2" "$3":"$4":"($5-01)
else if (/time/ && $5<01)
A=$2" "$3":"$4-01":"(59-$5)
else if (/time/ && $5<=10)
A=$2" "$3":"$4":0"($5-01)
else if (/close/) {
B=0
n1=n2;
... (2 Replies)
Discussion started by: klane
2 Replies
LEARN ABOUT DEBIAN
asnval
ASNVAL(1) NCBI Tools User's Manual ASNVAL(1)NAME
asnval - validate ASN.1 biological sequence records
SYNOPSIS
asnval [-] [-A] [-B] [-C N] [-D] [-E str] [-F] [-G] [-J] [-K] [-L filename] [-M] [-N flags] [-P N] [-Q N] [-R N] [-S N] [-T] [-U] [-X] [-Y]
[-Z] [-a type] [-b] [-c] [-d path] [-e] [-f str] [-i filename] [-k] [-l] [-o filename] [-p path] [-q] [-r] [-u] [-v N] [-x str]
DESCRIPTION
asnval is a command-line tool to validate ASN.1-format biological sequence records.
OPTIONS
A summary of options is included below.
- Print usage message
-A Validate Alignments
-B Validate Barcodes
-C N Max count
-D Disable message suppression
-E str Only Error Code to Show
-F Test network access
-G GI lookup from accession
-J Require ISO-JTA?
-K Summary to error file
-L filename
Log File
-M Match locus_tag against General ID
-N flags
Latitude-longitude / country flags
0 none
1 test state/province
2 ignore water exception
3 both of the above
-P N Highest severity for error to show:
0 none
1 informational
2 warning
3 error (default for -Q)
4 grounds for rejection (default for -P, -R)
-Q N Lowest severity for error to show, per P
-R N Severity for error in return code, per P
-S N Skip count
-T Use Threads
-U Genome center submission
-X Exon splice check
-Y Check against old IDs
-Z Remote CDS product fetch
-a type
Input ASN.1 type:
a Automatic (default)
c Catenated
z Any
e seq-Entry
b Bioseq
s bioseq-Set
m seq-subMit
t baTch bioseq-set
u batch seq-sUbmit
-b Batch file is Binary
-c Batch file is Compressed
-d path
Path to Indexed Binary ASN.1 Data
-e Ignore transcription/translation Exceptions
-x str Substring filter
-i filename
Single input file (standard input by default)
-k Local fetching
-l Lock components in advance
-o filename
Single output file
-p path
Path to ASN.1 Files
-q Taxonomy lookup
-r Remote Fetching from ID
-u Recurse
-v N Verbosity:
1 Standard report (default)
2 Accession / severity / code (space delimited)
3 Accession / severity / code (tab delimited)
4 XML report
5 Accession / GI / severity / code (tab delimited)
-x str File selection substring (.ent by default)
AUTHOR
The National Center for Biotechnology Information.
SEE ALSO asndisc(1), cleanasn(1), sequin(1).
NCBI 2012-06-24 ASNVAL(1)