UNIX for Dummies Questions & Answers

set def = HLA_DR.pockets
set data = DRB1_1501.dat 

foreach a ( 'cat $data | args 3 |sort -u'  )

cat $def | xC | grep -v $a > $$.def
cat $data | grep $a | args 1,2 > $a.dat

set pseudo = `cat  MHCDR_pseudo.dat | grep HLA | grep $a | args 2`
pickpocket_mn -pow $p -p $pseudo -d $$.def > $a.mat
cl2pred -mat $a.mat $a.dat | xC > $a.pred
echo $a 'cat $a.pred | args 2,3 | xycorr | xC ' 

end

#! /usr/bin/.....

#! /usr/bin/bash