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1. Shell Programming and Scripting
How to execute multiple files in multiple folders and also output to be generated in the same folder?
Hello Team,
I have a path like Sanity_test/*/* and it has around 100+ folders inside with files. I would like to run/execute those files and output of execution to be placed on same /... (1 Reply)
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2. Shell Programming and Scripting
I have a below file
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something
something
....
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3. Shell Programming and Scripting
Dear All,
I am trying to write a Unix Script which fires a sql query. The output of the sql query gives multiple rows. Each row should be saved in a separate Unix File.
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4. Shell Programming and Scripting
Hi,
I want to grep multiple patterns from multiple files and save to multiple outputs. As of now its outputting all to the same file when I use this command.
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5. Shell Programming and Scripting
I use this command to find a search (Nr of active alarms are) and print one line before and 10 lines after the search keywords.
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6. Shell Programming and Scripting
Hi Guys,
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9. Shell Programming and Scripting
Hello. Could do with some help on where to get started really. If anyone could help me it would be greatly appreciated.
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10. UNIX for Dummies Questions & Answers
I want to search the file /etc/passwd for all lines containing 'csh' but exlude all those lines that have '/usr' in them and dump the results into the file result.
IMPORTANT: I need to do this in one command line.
The following does not work:
grep -v \(\/usr\) \(csh\) /etc/passwd >... (4 Replies)
Discussion started by: sdemba
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ASN2FF(1) NCBI Tools User's Manual ASN2FF(1)
NAME
asn2ff - convert ASN.1 biological data to a flat format (old version)
SYNOPSIS
asn2ff [-] [-A X] [-B X] [-C] [-G] [-L F] [-M] [-R] [-V F] [-a filename] [-b] [-d] [-e] [-f b/p/e/s/x/z] [-g] [-h F] [-k F] [-l filename]
[-m r/d/s/c/k/l/e/p] [-n F] [-o filename] [-p F] [-q] [-r filename] [-s] [-t] [-v F] [-w] [-y] [-z]
DESCRIPTION
asn2ff converts descriptions of biological sequences from NCBI's ASN.1 format to one of several flat-file formats. This program is built
around a deprecated interface; please use asn2gb(1) instead.
OPTIONS
A summary of options is included below.
- Print usage message
-A X Show region starting at X (default is 0)
-B X Show region ending at X (default is last position)
-C Show Bankit comments
-G Output is one top bioseq only in genome view
-L F Use old (pre-Genbank 127.0) LOCUS line format
-M Output is map bioseqs only
-R For GenBank Release
-V F Don't use VERSION
-a filename
Filename for ASN.1 input (default is stdin)
-b Input asnfile in binary mode
-d Use SeqMgr indexing
-e Input is a Seq-entry
-f b/p/e/s/x/z
Output Format:
b GenBank (default)
p GenPept
e EMBL
s PseudoEMBL
x GenBankSelect
z EMBLPEPT
-g Show gi numbers
-h F Hide sequence
-k F Don't use complex sets (phy-set,mut-set, pop-set)
-l filename
Log errors to filename
-m r/d/s/c/k/l/e/p
Output mode:
r release (default)
d dump
s Sequin
c Chromoscope
k dir-sub-debug
l dir-sub
e revise
p partial report
-n F Strict gene_binding
-o filename
Output Filename (default is stdout)
-p F Omit new gene features
-q Output is one top bioseq only
-r filename
Output error logfile (default is stderr)
-s Input is a Seq-submit
-t Show verbose message text
-v F Suppress error messages
-w Use HTML output format
-y Print help format only
-z New algorithm for orgnames
AUTHOR
The National Center for Biotechnology Information.
SEE ALSO
asn2all(1), asn2asn(1), asn2fsa(1), asn2gb(1), asn2xml(1), asndhuff(1).
NCBI
2005-05-16 ASN2FF(1)
