UNIX for Dummies Questions & Answers

for x in 1 2 3 
do
for y in a b c 
do

filepath/1/ command modified by a 
filepath/2/ command modified by b
filepath/3/ command modified by c

set -- a b c # Set $1=a, $2=b, $3=c

for X in 1 2 3
do
        Y="$1"
        shift 1 # $1=a, $2=b, $3=c becomes $1=b, $2=c

        echo "filepath/$X/ command modified by $Y"
done

for s in amygSMA_R
do
for n in 
ANUP ANVA ANYA ANZH ARMU BELA CAWI CHAZ CHJO CHSC CHSH CRSW DAHA DIWE DOWI ELBU GLGO HOCH JASH JEAM JERE JOWR JYAK KABL KAGI KARO KRAR LAFR LATE LICR MAGE MEWE MILE MIWA NALU NYSH NYWE PAMA SATI SHCO SHME STAL SWPA TAGR TIKI UZOM

for x in 1712 1922 2001 1700 1743 1860 2017 1838 2190 1750 1973 1909 2075 1843 1906 2103 1957 1813 1888 1961 1893 1772 2038 1957 1959 2055 2036 1903 1775 1839 2144 2322 1844 1855 1722 1731 1722 2038 1788 1856 1949 1837 1864 1847 1831
do
fslmaths /filepath/$s/$n/fdt_paths -thr $x -bin fdt_paths_thr

echo $s
done
done
done

set -- ANUP ANVA ANYA ANZH ARMU BELA CAWI CHAZ CHJO CHSC CHSH CRSW DAHA DIWE DOWI ELBU GLGO HOCH JASH JEAM JERE JOWR JYAK KABL KAGI KARO KRAR LAFR LATE LICR MAGE MEWE MILE MIWA NALU NYSH NYWE PAMA SATI SHCO SHME STAL SWPA TAGR TIKI UZOM

for x in 1712 1922 2001 1700 1743 1860 2017 1838 2190 1750 1973 1909 2075 1843 1906 2103 1957 1813 1888 1961 1893 1772 2038 1957 1959 2055 2036 1903 1775 1839 2144 2322 1844 1855 1722 1731 1722 2038 1788 1856 1949 1837 1864 1847 1831
do
        echo "$1" "$x"
        shift 1
done

BLA=123
BLUB=234
FOO=345
...

while IFS="=" read VAL1 VAL2 ; do
     echo "VAL1 is $VAL1    and paired with     VAL2 is $VAL2"
done < /path/to/your.file

BLA=123=XYZ=000
BLUB=234=ABC=111
FOO=345=CDE=222
...

while IFS="=" read VAL1 VAL2 VAL3 VAL4 ; do
     echo "VAL1 is $VAL1 VAL2 is $VAL3 VAL3 is $VAL3 VAL4 is $VAL4"
done < /path/to/your.modified.file