Interpolation if there is no exact match for value


 
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Top Forums UNIX for Dummies Questions & Answers Interpolation if there is no exact match for value
# 8  
Old 05-09-2014
Code:
akshay@Aix:~/Desktop$ cat f1
BP         CM
752566 rs3094315
752721 rs3131972
753541 rs2073813
760300 rs11564776
12222222

Code:
akshay@Aix:~/Desktop$ cat f2
BP         CM
740857 1.984065
750235 2.009238
752566 2.012958
753269 2.013806
753541 2.014133
754745 2.014728
765948 2.019205
767038 2.019743
767070 2.019759
768448 2.020467
769551 2.020969
771521 2.021869

Code:
awk '

function find(Arr,key,arg,   low,upp,i){
			      low = upp = ""
			
			      for(i in Arr){
				            if(i<key)
						 {
						   low =  (low && low > i) ? low : i
						 }
					    if(i>key)
						 {   
					           upp =  (upp && upp < i) ? upp : i
						 }  	 
					     }
			    
			 low  =  (low != "") ? low : "-"
		         upp  =  (upp != "") ? upp : "-"
			 
			if(arg=="up"){return upp}
		   else if(arg=="dw"){return low}	 
}

function lin(x1,x3,y1,y3, x2){
				return (y1+(x2-x1)*(y3-y1)/(x3-x1))
			     }

 FNR==NR{ 
		A[$1] = $2
                next
        }
        {
		if($1 in A)
		{	
			# Exact match
			print $1,A[$1]
		} 
		else
		{
			# No match will interpolate
			x1=find(A,$1,"dw")
			x3=find(A,$1,"up")

		   # Whether we have upper and lower limit ?
		   if(x1 !="-" && x3 !="-")
			{
				# Yes interpolate
				y1=A[x1]
                                y3=A[x3] 
				print $1,lin(x1,x3,y1,y3, $1)
			}
			else
			{
				# No cannot interpolate so NaN
				print $1,"NaN"
			}
		}
	}
  ' f2 f1



Code:
akshay@Aix:~/Desktop$ ./interpolate 
BP CM
752566 2.012958
752721 2.01314
753541 2.014133
760300 2.01695
12222222 NaN


Last edited by Akshay Hegde; 05-09-2014 at 12:18 PM.. Reason: Bug fix
These 3 Users Gave Thanks to Akshay Hegde For This Post:
# 9  
Old 05-09-2014
How does one write WOW in a long drawn out expression of amazement?



Robin
# 10  
Old 05-09-2014
Robin, thanks a lot!
If i get
(standard_in) 1: illegal character: M
(standard_in) 1: illegal character: P

should the code be modified?
# 11  
Old 05-09-2014
I think you want to thank Akshay Hegde really. Press the SmilieThanks button at the end of the correct post.

Perhaps you could take out the headers from your file so that it's just the raw data.





Robin
This User Gave Thanks to rbatte1 For This Post:
# 12  
Old 05-09-2014
thanks guys a lot!
# 13  
Old 05-09-2014
@Kush there was one small bug with index I just fixed it, use updated code, and cross check from here... Linear Interpolation Equation Formula Calculator
This User Gave Thanks to Akshay Hegde For This Post:
# 14  
Old 05-09-2014
Good stuff, AkshayHedge!
One suggestion for the function implementation. If you variables local to the function, declare them as formal in the function declaration. Otherwise their scope is global and they may clash with other globals and the result may be something that's not desirable.
The function call will stay the same - you're passing only what you need to pass.
Here's the illustration of your function:
Code:
function find(Arr,key,arg,   low,upp,i){
                              low = upp = ""

                              for(i in Arr){
                                            if(i<key)
                                                 {
                                                   low =  (low && low > i) ? low : i
                                                 }
                                            if(i>key)
                                                 {
                                                   upp =  (upp && upp < i) ? upp : i
                                                 }
                                             }

                         low  =  (low != "") ? low : "-"
                         upp  =  (upp != "") ? upp : "-"

                        if(arg=="up"){return upp}
                   else if(arg=="dw"){return low}
}

These 2 Users Gave Thanks to vgersh99 For This Post:
 
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