Extract lines starting with rs


 
Thread Tools Search this Thread
Top Forums UNIX for Dummies Questions & Answers Extract lines starting with rs
# 1  
Old 05-07-2014
Extract lines starting with rs

hello!
could u, please, help:
i have a file that includes 6 columns space delimited
Code:
1    rs4477212    0    82154    0    T
1    rs6680825    0    91472    0    G
1    rs9326626    0    570178    0    T
1    rs12123356    0    724702    0    C

I need to extract to a separate file lines that contain "rs" (from the 2 column) (beside rs, there are other beginnings occur).
thank u a lot!

Moderator's Comments:
Mod Comment Please use code tags next time for your code and data. Thanks
# 2  
Old 05-07-2014
try
Code:
awk '{if($2 ~ /^rs/) {print $0}}' file

This User Gave Thanks to Makarand Dodmis For This Post:
# 3  
Old 05-07-2014
Code:
 perl -ne 'print if/^\d+\s+rs/' <filename>

This User Gave Thanks to Skrynesaver For This Post:
# 4  
Old 05-07-2014
# 5  
Old 05-07-2014
Making use of default mechanisms in awk, Makarand Dodmis' proposal can be reduced to
Code:
awk '$2~/^rs/' file

This User Gave Thanks to RudiC For This Post:
# 6  
Old 05-08-2014
RudiC, thanks a lot!
 
Login or Register to Ask a Question

Previous Thread | Next Thread

10 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

How to grep a line not starting with # from a file (there are two lines starting with # and normal)?

e.g. File name: File.txt cat File.txt Result: #INBOUND_QUEUE=FAQ1 INBOUND_QUEUE=FAQ2 I want to get the value for one which is not commented out. Thanks, (3 Replies)
Discussion started by: Tanu
3 Replies

2. Shell Programming and Scripting

Extract between lines starting with and

I have a combination of patterns to search. file.txt contains below: H2016-02-10 A74867712 I1556539758 Xjdflk534jfl W0000055722327732 W0000056029009389 A74867865 I1556536434 W0000055822970840 W0000055722325916 A74868015 I1556541270 C0000055928920421 E lines starting with A are... (5 Replies)
Discussion started by: chakrapani
5 Replies

3. Shell Programming and Scripting

ksh sed - Extract specific lines with mulitple occurance of interesting lines

Data file example I look for primary and * to isolate the interesting slot number. slot=`sed '/^primary$/,/\*/!d' filename | tail -1 | sed s'/*//' | awk '{print $1" "$2}'` Now I want to get the Touch line for only the associate slot number, in this case, because the asterisk... (2 Replies)
Discussion started by: popeye
2 Replies

4. Shell Programming and Scripting

Extract words starting with a pattern from a file

Hi Guys.. I have a file and i want to extract all words that starts with a pattern 'ABC_' or 'ADF_' For example, ABC.txt ---- INSERT INTO ABC_DLKFJAL_FJKLD SELECT DISTINCT S,B,C FROM ADF_DKF_KDFJ_IERU8 A, ABC_LKDJFREUE9_FJKDF B WHERE A.FI=B.EI; COMMIT; Output : ABS_DLKFJAL_FJKLD,... (5 Replies)
Discussion started by: Pramod_009
5 Replies

5. Shell Programming and Scripting

Return lines except those with starting with #, A and *

OS: RHEL 5.8 I have a text file like below $ cat mylist.txt # Multiple entries starting June 1, 2013 # # #AGENT TOUK1TOY1 TOUK1GTF1 ROUK1MET1 TOUK1GTF TOUK2TOY1 TOUK2GTF EOUK2GTF1 WOUK1RTO TOUK1RTO1 GOUK2RTO KOUK2RTO1 (2 Replies)
Discussion started by: John K
2 Replies

6. Shell Programming and Scripting

Supressing lines starting with #

Ok, I should know how to do this... I want to run crontab -l and pipe it through sed so that only those lines that do not have a # as the first character show on the screen... I know Ive doen this before but its been a decade since I scripted anything Im working in AIX 7.1 using the crontab... (3 Replies)
Discussion started by: immagikman
3 Replies

7. Shell Programming and Scripting

Search for a pattern,extract value(s) from next line, extract lines having those extracted value(s)

I have hundreds of files to process. In each file I need to look for a pattern then extract value(s) from next line and then search for value(s) selected from point (2) in the same file at a specific position. HEADER ELECTRON TRANSPORT 18-MAR-98 1A7V TITLE CYTOCHROME... (7 Replies)
Discussion started by: AshwaniSharma09
7 Replies

8. Shell Programming and Scripting

Remove all lines except lines starting with [

Hello, I am trying to remove all the lines in file except lines starting with [ How can i accomplish this? Thank you very much in advance. (4 Replies)
Discussion started by: maxo
4 Replies

9. Shell Programming and Scripting

Concatenate lines between lines starting with a specific pattern

Hi, I have a file such as: --- >contig00001 length=35524 numreads=2944 gACGCCGCGCGCCGCGGCCAGGGCTGGCCCA CAGGCCGCGCGGCGTCGGCTGGCTGAG >contig00002 length=4242 numreads=43423 ATGCCGAAGGTCCGCCTGGGGCTGG CGCCGGGAGCATGTAGCG --- I would like to concatenate the lines not starting with ">"... (9 Replies)
Discussion started by: s052866
9 Replies

10. Emergency UNIX and Linux Support

Urgent help pls.how to extract two lines having same starting number

Hi , I have a huge file like this =245 this is testing =035 abc123 =245 this is testing1 =035 abc124 =245 this is testing2 =035 abc125 =035 abc126 =245 this is testing3 here i have to pull out those lines having two =035 instead of alternative 035 and 245 i.e extract... (18 Replies)
Discussion started by: umapearl
18 Replies
Login or Register to Ask a Question