I don't really care about the order. Just need to have two columns where the first one is the columns of SNP_... and the second one is the z-score.
The first problem is that the z-score column is shifted down by one. Every 4th column is empty. Then I don't need every 3rd and 4th column, I need columns 1,2, 5,6, 9,10etc.
So, first I've tried to create 2 files with every 5th and 6th columns:
the file with every 5th column (starting with the 1st):
Code:
for((i=1;i<=7;i+4));
do
cut -f i in file > outfile1
done
the file with every 6th column (starting with 2nd):
Code:
for((i=2;i<=7;i+4));
do
cut -f i in file > outfile2
done
The immediately obvious problem is that the string i is not a numeric value. Try changing:
Code:
cut -f i in file > outfile2
to:
Code:
cut -f $i in file > outfile2
I would also guess that you meant to have the single file infile as an input file instead of the two files in and file. If that is correct, what you probably wanted is:
Code:
cut -f $i infile > outfile2
You have a few lines like this with different output files. They all need to be fixed.
Hi,
I have code like below
disk_list=$(ls /root/file1)
for disk in $disk_list
do
pvcreate $i
done
I know what pvcreate command does, but I do not understand what this $i do here. can someone please explain. (2 Replies)
Hi,
I have a requirement where I have to check for 10 files in Unix location. If all of the files present in that directory then i have execute another process.
can you help me resolving this issue.
sample
location
/home/usr
abc.txt
cde.txt
aaaa.txt
lll.txt
ooo.txt
if all the... (3 Replies)
I have two files. In file one, there are many columns, but only two of interest to me. Column 1 contains a list of individuals, defined by an ID number. Column 10 contains the diagnosis that each individual has (I am a physician). All together, there are 3000 lines in this file, one line per... (2 Replies)
Hi,
I'm trying to put together a small script that will read a txt file that contains a list of two columns. Each column is the name of a folder..
e.g.
AIX Server1
AIX Server2
AIX Server3
$ for i in `cat /opt/apacheprod/scripts/input/copy_list.txt`
do
PLATFORMVAR=`awk ' { print $1 } '... (7 Replies)
I am struggling with the for loop. I have a file name heros.txt and I would like to go through a list in file where.txt and see if I can find the name from where inside heros.
One of the problems that I am having is I dont understand how to setup the for loop to find the list to search.:wall:
... (6 Replies)
hey guys what im trying to do is do a simple script that will ask for a password and on the 5th time it says access denied if the right password is still not entered this is what i have so far can anyone help me im not good with scripting
thanks in advance
#!/bin/bash
secretname=secret... (2 Replies)
I'm improving the way an existing script handles arrays, but the results aren't what I had in mind:
e="Too many consecutive errors... System is probably unstable!"
e="Cancelable Timer Wait Failed!"
for errcd in ${e}
do
echo ${errcd}
done
The for loop interprets the spaces... (2 Replies)
Hi all
Sorry for the basic question, but i am writing a shell script to get around a slightly flaky binary that ships with one of our servers. This particular utility randomly generates the correct information and could work first time or may work on the 12th or 100th attempt etc !.... (4 Replies)
hi,
how would i go about making a loop which gets each line from a single text file, set it to a variable and then print it to screen?
thanks
eg:
#!/bin/sh
FILE="somefile.txt"
text_line=""
what kind of loop would use here? (18 Replies)