10 More Discussions You Might Find Interesting
1. UNIX for Beginners Questions & Answers
I have files that have the following columns
chr pos ref alt sample 1 sample 2 sample 3
chr2 179644035 G A 1,107 0,1 58,67
chr7 151945167 G T 142,101 100,200 500,700
chr13 31789169 CTT CT,C 6,37,8 0,0,0 15,46,89
chr22 ... (3 Replies)
Discussion started by: nans
3 Replies
2. Shell Programming and Scripting
Hello Members,
Need your expert opinion how to tackle below.
I have an input file that looks like below:
USS|AWCC|AFGAW|93|70
USSAA|Roshan TDCA|AFGTD|93|72,79
ALB|Vodafone|ALBVF|355|69
ALGEE|Wataniya (Nedjma)|DZAWT|213|50,550
I like output file in below format:
... (7 Replies)
Discussion started by: umarsatti
7 Replies
3. Shell Programming and Scripting
I have the need to match the first two columns and when they match, calculate the percent of average for the third columns. The following awk script does not give me the expected results.
awk 'NR==FNR {T=$3; next} $1,$2 in T {P=T/$3*100; printf "%s %s %.0f\n", $1, $2, (P>=0)?P:-P}' diff.file... (1 Reply)
Discussion started by: ncwxpanther
1 Replies
4. Shell Programming and Scripting
Hi,
My input file
Gene1 1
Gene1 2
Gene1 3
Gene1 0
Gene2 0
Gene2 0
Gene2 4
Gene2 8
Gene3 9
Gene3 9
Gene4 0
Condition:
If the first column matches, then look in the second column. If there is a value of zero in the second column, then don't consider that record while averaging.
... (5 Replies)
Discussion started by: jacobs.smith
5 Replies
5. Shell Programming and Scripting
Hi all,
I think so I’m getting the result is wrong, while using following awk commend,
colval=$(awk 'FNR>1 && NR==FNR{a=$4;next;} FNR>1 {a+=$4; print $2"\t"a/3}'
filename_f.tsv filename_f2.tsv filename_f3.tsv)
echo $colval >> Result.tsv
it’s doing the condition 2 times, first result... (5 Replies)
Discussion started by: Shenbaga.d
5 Replies
6. Shell Programming and Scripting
Hi,
I would like to calculate the average of column 'y' based on the value of column 'pos'.
For example, here is file1
id pos y c
11 1 220 aa
11 4333 207 f
11 5333 112 ee
11 11116 305 e
11 11117 310 r
11 22228 781 gg
11 ... (2 Replies)
Discussion started by: jackken007
2 Replies
7. Shell Programming and Scripting
I have a lot of input files that have the following form:
Sample Cq Sample Cq Sample Cq Sample Cq Sample Cq
1WBIN 23.45 1WBIN 23.45 1CVSIN 23.96 1CVSIN 23.14 S1 31.37
1WBIN 23.53 1WBIN 23.53 1CVSIN 23.81 1CVSIN 23.24 S1 31.49
1WBIN 24.55 1WBIN 24.55 1CVSIN 23.86 1CVSIN 23.24 S1 31.74 ... (3 Replies)
Discussion started by: isildur1234
3 Replies
8. UNIX for Dummies Questions & Answers
Hey all, I am relatively poor at programming and unfortunately don't have time to read about programming at this current moment.
I wanted to be able to run a simple command to read a column of numbers in a file and give me the average of those numbers. In addition if I could specify the... (2 Replies)
Discussion started by: Leonidsg
2 Replies
9. UNIX for Dummies Questions & Answers
Dear Gurus,
I am very new to UNIX. I appreciate your help to manage my files.
I have 16 files with equal number of columns in it. Each file has 9 columns separated by space. I need to compare the values in the second column of first file and obtain the corresponding value in the 9th column... (12 Replies)
Discussion started by: Unilearn
12 Replies
10. Shell Programming and Scripting
Hi,
I have 20 files which have respective 50 lines with different values.
I would like to process each line of the 50 lines in these 20 files one at a time and do an average of 3rd field ($3) of these 20 files. This will be output to an output file.
Instead of using join to generate whole... (8 Replies)
Discussion started by: ahjiefreak
8 Replies