10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I am trying to mv each of the .vcf files in the variants folder to the folder in /home/cmccabe/f2 that the .vcf id is found in file. $2 in file will always have the id of a .vcf in the variants folder. The line in blue staring with R_2019 in file up to the -v5.6 will always be an exact match to a... (4 Replies)
Discussion started by: cmccabe
4 Replies
2. Shell Programming and Scripting
I am trying to use awk to create (in this example) 3 seperate text file from the unique id in $1 in file, if it starts with the pattern aa. The contents of each row is used to populate each text file except for $1 which is not needed. It seems I am close but not quite get there. Thank you :).
... (3 Replies)
Discussion started by: cmccabe
3 Replies
3. Shell Programming and Scripting
I have a directory /home/cmccabe/nfs/exportedReports that contains multiple folders in it. The find writes the name of each folder to out.txt. A new directory is then created in a new location /home/cmccabe/Desktop/NGS/API, named with the date. What I am trying to do, unsuccessfully at the moment,... (7 Replies)
Discussion started by: cmccabe
7 Replies
4. Shell Programming and Scripting
The bash below will download all the files in download to /home/Desktop/folder. That works great, but within /home/Desktop/folder there are several folders bam, other, and vcf, is there a way to specify by extention in the download file where to download it to?
For example, all .pdf and .zip... (2 Replies)
Discussion started by: cmccabe
2 Replies
5. Shell Programming and Scripting
I am trying to download all files from a user authentication, password protected https site, with a particular extension (.bam). The files are ~20GB each and I am not sure if the below is the best way to do it. I am also not sure how to direct the downloaded files to a folder as well as external... (7 Replies)
Discussion started by: cmccabe
7 Replies
6. Shell Programming and Scripting
Hello,
I heva a problem creating a script that read specifc value from all the files of an entire folder
I have a number of email files into a directory and i need to extrect from each file 2 specific values.
After that i have to put them into a new file that looks like that:
To: value1
... (1 Reply)
Discussion started by: ahmenty
1 Replies
7. Shell Programming and Scripting
I'm trying to update a text file via sed/awk, after a lot of searching I still can't find a code snippet that I can get to work.
Brief overview:
I have user input a line to a variable, I then find a specific value in this line 10th field in this case. After asking for new input and doing some... (14 Replies)
Discussion started by: crownedzero
14 Replies
8. Shell Programming and Scripting
Context:
I have a random pin number generator script that reads a tab-delimited file containing a location and a count:
eg.,
mansfield 30
tokyo 15
smithville 34It produces random PIN# in the amount specified by the number in the second column.
Currently, I read the file... (7 Replies)
Discussion started by: Bubnoff
7 Replies
9. Shell Programming and Scripting
Hi guys,
I am new to AWK and unix scripting. Please see below my problem and let me know if anyone you can help.
I have 2 input files (example given below)
Input file 2 is a standard file (it will not change) and we have to get the name (second column after comma) from it and append it... (5 Replies)
Discussion started by: sksahu
5 Replies
10. Shell Programming and Scripting
assume files are in a directory
/data
$ ls -ltr
Just displaying Data and file name:
01/01/2004 file_3434_typea.dat
01/01/2004 file_3423_typea.dat
01/01/2004 file_3436_typea.dat
01/01/2004 file_3434_typeb.dat
01/01/2004 file_3423_typeb.dat
01/01/2004 file_3436_typeb.dat ... (3 Replies)
Discussion started by: siva_jm
3 Replies