10 More Discussions You Might Find Interesting
1. Programming
I realize this general issue (inputting strings of variable length in C) has been addressed in myriad locations before, but I'm interested in knowing why my specific approach is not working. (BTW I'm intentionally keeping the size increments small so that I can more easily follow what's going on.... (5 Replies)
Discussion started by: DevuanFan
5 Replies
2. Shell Programming and Scripting
I am trying to read 30 files into a command. The first file contains 10 lines and goes into this part of the command as "x"
/tmp/filearrange.sh $x
The group of files (20 files, I call them variable $i) need to be the second argument in the command and they need to be read so that they are... (9 Replies)
Discussion started by: newbie2010
9 Replies
3. Programming
I can't seem to successfully output characters with spaces. I inputted using getchar().
Any other ideas?
Thank you in advance!
printf ("Enter the Title : ");
int i = 0;
int c1;
while (( c1!= '\n')&& (i <21))
{
new_name->title = c1;
i++; ... (0 Replies)
Discussion started by: Nephilim.F
0 Replies
4. Shell Programming and Scripting
Hi,
Hope you are all well. New to scripting, and all those characters are all a new language for me. Though hoping to get my little head round it all sooner or later.
I was wondering whether anyone could help with a script template example.
What I would like to happen is to run the script... (8 Replies)
Discussion started by: loky27
8 Replies
5. UNIX for Dummies Questions & Answers
Hi all, I have a script which uses a basic line to add text into another file e.g.
grep -i test * >> test.txt
Is there a way I can get the output of the grep to output to a specific line in the text.txt for example output above the line starting "Bottom line..." (6 Replies)
Discussion started by: JayC89
6 Replies
6. Homework & Coursework Questions
Hi All,
We've been given the exercise below and I'm stumbling at the first block because we have to take in 20 student names and I don't know how to store them! :(
I know that I can create (initialize) 20 different char arrays but this seems wrong somehow...
What's the best way to store... (2 Replies)
Discussion started by: pondlife
2 Replies
7. Shell Programming and Scripting
Hi all,
In one of my script, somewhere I need to input password of a server when ssh password's prompt comes. I've tried with EOF but it's not taking. I don't want to disable password through ssh. I want the password should be passed with my script. Any suggestion?
Thanks in advance! (2 Replies)
Discussion started by: naw_deepak
2 Replies
8. Shell Programming and Scripting
I have this working ksh, and it returns like below:
LOGICAL VOLUME: prod_2048_005 VOLUME GROUP: prod1vg
TYPE: raw WRITE VERIFY: off
PHYSICAL VOLUME: hdisk108 VOLUME GROUP: prod1vg
TOTAL PPs: 1023 (130944 megabytes) VG DESCRIPTORS: 1
USED PPs: 904 (115712 megabytes) MAX REQUEST: 1 megabyte... (1 Reply)
Discussion started by: Daniel Gate
1 Replies
9. UNIX for Dummies Questions & Answers
Hiya all ... i am a newbie to UNIX,
Just want to knwo what this command does:
/sbin/ifconfig eth0 | grep 'inet addr:' | cut -d: -f2 | awk '{ print $1}'
I think, 'grep shows the line with 'inet addr' (which is the 2nd line, displaying the IP Address, Broadcast Address and Subnet Mask) ... Is... (8 Replies)
Discussion started by: ad4m88
8 Replies
10. UNIX for Dummies Questions & Answers
from the man page of su:
EXAMPLES
Example 1: Becoming User bin While Retaining Your Previously
Exported Environment
To become user bin while retaining your previously exported
environment, execute:
example% su bin
Example 2: Becoming User bin and ... (4 Replies)
Discussion started by: afflack
4 Replies
Bio::Graphics::Glyph::translation(3pm) User Contributed Perl Documentation Bio::Graphics::Glyph::translation(3pm)
NAME
Bio::Graphics::Glyph::translation - The "6-frame translation" glyph
SYNOPSIS
See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.
DESCRIPTION
This glyph draws the conceptual translation of DNA sequences. At high magnifications, it simply draws lines indicating open reading
frames. At low magnifications, it draws a conceptual protein translation. Options can be used to set 1-frame, 3-frame or 6-frame
translations.
OPTIONS
The following options are standard among all Glyphs. See Bio::Graphics::Glyph for a full explanation.
Option Description Default
------ ----------- -------
-fgcolor Foreground color black
-outlinecolor Synonym for -fgcolor
-bgcolor Background color turquoise
-fillcolor Synonym for -bgcolor
-linewidth Line width 1
-height Height of glyph 10
-font Glyph font gdSmallFont
-connector Connector type 0 (false)
-connector_color
Connector color black
-label Whether to draw a label 0 (false)
-description Whether to draw a description 0 (false)
-hilite Highlight color undef (no color)
In addition to the common options, the following glyph-specific options are recognized:
Option Description Default
------ ----------- -------
-translation Type of translation to 1frame
perform. One of "1frame",
"3frame", or "6frame"
-strand Forward (+1) or reverse (-1) +1
translation.
-frame0 Color for the first frame fgcolor
-frame1 Color for the second frame fgcolor
-frame2 Color for the third frame fgcolor
-gridcolor Color for the horizontal lightgrey
lines of the reading frames
-start_codons Draw little arrowheads 0 (false)
indicating start codons
-stop_codons Draw little vertical ticks 1 (true)
indicating stop codons
-arrow_height Height of the start codon 1
arrowheads
-show_sequence Show the amino acid sequence 1 (true)
if there's room.
-triletter_code Show the 3-letter amino acid 0 (false)
code if there's room
-codontable Codon table to use 1 (see Bio::Tools::CodonTable)
SUGGESTED STANZA FOR GENOME BROWSER
This produces a nice gbrowse display in which the DNA/GC Content glyph is sandwiched between the forward and reverse three-frame
translations. The frames are color-coordinated with the example configuration for the "cds" glyph.
[TranslationF]
glyph = translation
global feature = 1
frame0 = cadetblue
frame1 = blue
frame2 = darkblue
height = 20
fgcolor = purple
strand = +1
translation = 3frame
key = 3-frame translation (forward)
[DNA/GC Content]
glyph = dna
global feature = 1
height = 40
do_gc = 1
fgcolor = red
axis_color = blue
[TranslationR]
glyph = translation
global feature = 1
frame0 = darkred
frame1 = red
frame2 = crimson
height = 20
fgcolor = blue
strand = -1
translation = 3frame
key = 3-frame translation (reverse)
BUGS
Please report them.
SEE ALSO
Bio::Graphics::Panel, Bio::Graphics::Glyph, Bio::Graphics::Glyph::arrow, Bio::Graphics::Glyph::cds, Bio::Graphics::Glyph::crossbox,
Bio::Graphics::Glyph::diamond, Bio::Graphics::Glyph::dna, Bio::Graphics::Glyph::dot, Bio::Graphics::Glyph::ellipse,
Bio::Graphics::Glyph::extending_arrow, Bio::Graphics::Glyph::generic, Bio::Graphics::Glyph::graded_segments,
Bio::Graphics::Glyph::heterogeneous_segments, Bio::Graphics::Glyph::line, Bio::Graphics::Glyph::pinsertion, Bio::Graphics::Glyph::primers,
Bio::Graphics::Glyph::rndrect, Bio::Graphics::Glyph::segments, Bio::Graphics::Glyph::ruler_arrow, Bio::Graphics::Glyph::toomany,
Bio::Graphics::Glyph::transcript, Bio::Graphics::Glyph::transcript2, Bio::Graphics::Glyph::translation, Bio::Graphics::Glyph::triangle,
Bio::DB::GFF, Bio::SeqI, Bio::SeqFeatureI, Bio::Das, GD
AUTHOR
Lincoln Stein <lstein@cshl.org>.
Copyright (c) 2001 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
perl v5.14.2 2012-02-20 Bio::Graphics::Glyph::translation(3pm)