10 More Discussions You Might Find Interesting
1. UNIX for Beginners Questions & Answers
I have to mine the following sequence pattern from a large fasta file namely gene.fasta (contains multiple fasta sequences) along with the flanking sequences of 5 bases at starting position and ending position,
AAGCZ-N16-AAGCZ
Z represents A, C or G (Except T)
N16 represents any of the four... (3 Replies)
Discussion started by: dineshkumarsrk
3 Replies
2. Shell Programming and Scripting
I would like to take a fasta file formated like
>0001
agttcgaggtcagaatt
>0002
agttcgag
>0003
ggtaacctga
and use command line perl to move the all sample gt 8 in length to a new file. the result would be
>0001
agttcgaggtcagaatt
>0003
ggtaacctga
cat ${sample}.fasta | perl -lane... (2 Replies)
Discussion started by: jdilts
2 Replies
3. UNIX for Dummies Questions & Answers
Hi
I am looking to rename the contents of this dir, each one with a new timestamp, interval of a second for each so it the existing format is on lhs and what I want is to rename each of these to what is on rhs..hopefully it nake sense
CDR.20060505.150006.gb CDR.20121211.191500.gb... (3 Replies)
Discussion started by: rob171171
3 Replies
4. Solaris
hi,
I would like to monitor a log file, which rolls over, everytime a server is restarted.
I would like to grep for a string, and to be more efficient i'd like to grep only newly appended data. so something like a 'tail -f' would do, however, as the log rolls over i think a 'tail -F' is... (2 Replies)
Discussion started by: horhif
2 Replies
5. Shell Programming and Scripting
Hi All,
I have a unix shell script file as below.
My task is
a)to replace 248 to 350 and need to create a new file as BW3_350.sh
b)to replace 248 to 380 and need to create a new file as BW3_380.sh
c)to replace 248 to 320 and need to create a new file as BW3_320.sh
there is no... (6 Replies)
Discussion started by: karthi_mrkg
6 Replies
6. Shell Programming and Scripting
Hi all ,
I'm new to unix
I have a checked project , there exists a file called xxx.config .
now my task is to find all the files in the checked out project which references to this xxx.config file.
how do i use grep or find command . (2 Replies)
Discussion started by: Gangam
2 Replies
7. Shell Programming and Scripting
HI,
Please find the text below. I receive a .csv file on server. I need the comma(,) in the second column to be replaced by a semi-colon( ; ).
How to do it. Please help.
Sample text:
"1","lastname1,firstname1","xxxxxx","19/10/2009","23/10/2009","0","N","Leave"... (2 Replies)
Discussion started by: libin4u2000
2 Replies
8. Shell Programming and Scripting
find . -type f -name "*.sql" -print|xargs perl -i -pe 's/pattern/replaced/g'
this is simple logic to find and replace in multiple files & folders
Hope this helps.
Thanks
Zaheer (0 Replies)
Discussion started by: Zaheer.mic
0 Replies
9. UNIX for Dummies Questions & Answers
how to use sed command to find and replace a directory
i have a file.. which contains lot of paths ...
for eg.. file contains..
/usr/kk/rr/12345/1
/usr/kk/rr/12345/2
/usr/kk/rr/12345/3
/usr/kk/rr/12345/4
/usr/kk/rr/12345/5
/usr/kk/rr/12345/6
/usr/kk/rr/12345/7... (1 Reply)
Discussion started by: wip_vasikaran
1 Replies
10. Shell Programming and Scripting
I get a text file with 70+ columns (seperated by Tab) and about 10000 rows. The 58th Column is all numbers. But sometimes 58th columns has "/xxx=##" after the numeric data. I want to truncate this string using the script. Any Ideas...:confused: (3 Replies)
Discussion started by: gagansharma
3 Replies
pddump(1) General Commands Manual pddump(1)
NAME
pddump - Dump profiling data files
SYNOPSIS
pddump file...
OPERANDS
A data file generated by a profiled program. A valid file is identified as a "profiling data file" by the file(1) command.
DESCRIPTION
The pddump command displays, on the standard output, the record definitions and data of the specified profiling data files.
Each file's dump is prefixed by the line "File = file:". This is followed by the file's field-alignment option and a list containing the
file's name/value attribute pairs and the file's record definitions. Then each record in the file is dumped, showing the name of the record
and the name and value of each of its fields.
Strings are printed within double quotes, unsigned integers are printed in hexadecimal, and signed integers and floating-point numbers are
printed in decimal. Non-array data lines contain equal signs to assist in filtering.
The content of the profiling data files produced by Tru64 UNIX may be expanded in future releases, but Tru64 UNIX tools will continue to
support older formats. To write tools that process Tru64 UNIX profiling data files, use the pdtostd(1) command to convert the Tru64 UNIX
formats to industry standard formats, where a standard format exists. Alternatively, use the libpdf.a utilities to read the profiling data
files directly, skipping any new attributes, records, or fields that may appear.
FILES
Library of routines for reading and writing profiling data files Header file for libpdf.a
SEE ALSO
Commands: atom(1), cc(1), file(1), kprofile(1), pdtostd(1), uprofile(1)
AtomTools: hiprof(5), pixie(5)
Programmer's Guide
pddump(1)