For loop


 
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# 1  
Old 11-09-2011
For loop

Hi guys,

I'm having some issues with this for loop

Code:
 
for a in *.fa
do
    if [ -f $a ]  
    then
        echo "Starting..$a"
        (some program will run..)
    else
        echo "file $a cannot be opened for reading...FIX IT!"
    fi
done

I am receiving this error:

Quote:
for: Command not found.
do: Command not found.
a: Undefined variable.
any ideas?

Last edited by vbe; 11-09-2011 at 12:49 PM.. Reason: presentation of code...
# 2  
Old 11-09-2011
I just checked... should work or did I correct it without noticing?
# 3  
Old 11-09-2011
I replaced *.fa by *.txt and just tested:
Code:
Starting..060117_manip.txt
Starting..203351.txt
Starting..203711.txt
Starting..4ux.com.txt
Starting..A.txt
Starting..B.txt
Starting..C.txt
...

# 4  
Old 11-09-2011
i am submitting this to qsub if that's important... I have no idea why it's not working for me
# 5  
Old 11-10-2011
Well qsub is not what I call a standard UNIX command... I find no qsub on HPUX(11i) SOLARIS(10) or AIX(6.2).
So it may be where to look for the issue...
Using vi , I put the loop in a file called 003:
Code:
for a in *.txt
do
    if [ -f $a ]
    then
        echo "Starting..$a"
        #(some program will run..)
    else
        echo "file $a cannot be opened for reading...FIX IT!"
    fi
done

see:
Code:
n12:/home/vbe $ ll 003
-rw-rw-r--    1 vbe      sysdso          194 Nov 09 17:51 003

and executed it like this:
Code:
n12:/home/vbe $ sh 003|more

Do the same!
It it works, your issue is elsewhere...
 
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