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Getting non unique lines from concatenated files

 
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# 92  
Old 03-29-2011
@ctsgnb:

What day do I prefer for what ??? can u clarify your question please !! And by the way I'm not aware of Enigma for a start !
# 93  
Old 03-29-2011
Answer : Thanks giving

---------- Post updated at 10:37 PM ---------- Previous update was at 10:37 PM ----------

.... Smilie
This User Gave Thanks to ctsgnb For This Post:
pawannoel
# 94  
Old 03-29-2011
Quote:
Originally Posted by ctsgnb
Answer : Thanks giving

---------- Post updated at 10:37 PM ---------- Previous update was at 10:37 PM ----------

.... Smilie
hehe, good one Smilie But it is positive thing. So many posters won't even say if our code or advice helped them.. not even thinking about saying "Thanks" Smilie
This User Gave Thanks to bartus11 For This Post:
pawannoel
# 95  
Old 03-30-2011
Good one .... just didn't catch it earlier ... he he
But, I do really mean all my THANKS' to you guys .... it not easy to find someone who can help you learn new stuff which makes you get your job done at the same time ....
Keep the good stuff coming Smilie
Cheers !!

---------- Post updated 03-30-11 at 04:52 AM ---------- Previous update was 03-29-11 at 04:00 PM ----------

Hello Smilie
I have another question ...
So I'm trying to modify and use one of you previous codes on the following sample file
Code:
levure5/levure5.raw.vcf:SK1.scplasm1    6153    fwd_ref_allele=2    rev_ref_allele=2    fwd_non_ref_allele=1706    rev_non_ref_allele=3565    
levure6/levure6.raw.vcf:SK1.scplasm1    6153    fwd_ref_allele=9    rev_ref_allele=1    fwd_non_ref_allele=1250    rev_non_ref_allele=2356    
levure7/levure7.raw.vcf:SK1.scplasm1    6153    fwd_ref_allele=8    rev_ref_allele=3    fwd_non_ref_allele=732    rev_non_ref_allele=1343    
levure8/levure8.raw.vcf:SK1.scplasm1    6153    fwd_ref_allele=5    rev_ref_allele=3    fwd_non_ref_allele=861    rev_non_ref_allele=1559    
levure5/levure5.raw.vcf:SK1.chr08    558643    fwd_ref_allele=122    rev_ref_allele=120    fwd_non_ref_allele=93    rev_non_ref_allele=58    
levure6/levure6.raw.vcf:SK1.chr08    558643    fwd_ref_allele=115    rev_ref_allele=96    fwd_non_ref_allele=64    rev_non_ref_allele=47    
levure7/levure7.raw.vcf:SK1.chr08    558643    fwd_ref_allele=44    rev_ref_allele=47    fwd_non_ref_allele=32    rev_non_ref_allele=15    
levure8/levure8.raw.vcf:SK1.chr08    558643    fwd_ref_allele=49    rev_ref_allele=69    fwd_non_ref_allele=29    rev_non_ref_allele=46    
levure5/levure5.raw.vcf:SK1.chr08    558978    fwd_ref_allele=157    rev_ref_allele=45    fwd_non_ref_allele=87    rev_non_ref_allele=55

So in $F[0] I want to replace everything until and including SK1. with nothing so what could be the regular expression for that? So basically it should just have scplasm1 or chr08 in the above case. I tried a few variations like
Code:
s/levure*\/levure*\.raw\.vcf\:SK1\.//g

but failed !!
I need to modify this in your code provided here https://www.unix.com/302508289-post65.html to calculate mean of feilds $F[2] to $F[5] ... I mean its the same thing but I'm not getting my head around how to include the sed and to do the calculation for the other 2 feilds the last bit with the keys of the hashes. Could you please suggest a solution ?
Thanks a lot like always. Good day!!
Cheers Smilie
# 96  
Old 03-30-2011
Try:
Code:
perl -pe 's/^.*SK1\.//' file

This User Gave Thanks to bartus11 For This Post:
pawannoel
# 97  
Old 03-30-2011
Thank you .... at one point I was very close to your regex like
Code:
s/^*SK1\.//g

with just had a "dot" missing !!
CheersSmilie
# 98  
Old 03-30-2011
Code:
's/^.*SK1\.//'

That dot is very important. Without it this regex: "^*" is meaningless (zero or more string beginnings).
This User Gave Thanks to bartus11 For This Post:
pawannoel
 
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