Hello guys !
Need a bit of help is compiling a code, the makefile for which was originally designed to work on a 32-bit Linux platform, for a 64-bit Linux platform.
My platform is Ubuntu 10.04 LTS 64-bit. I am trying to compile a code called csim, file name csim-1.1.tar.gz. To compile this code you need to first set up Matlab's mex utility first, and I already have that.
When you un-tar the code into a directory called, there are two Makefiles one in lsm/csim which calls another Makefile in lsm/csim/src. lsm/csim/src also contains the csim_mex72_opt.sh file for the compile and linker options that the Makefile should use. The two Makefiles have been pasted at the bottom of this email.
Now the problem that I am facing is that when I run "make -f Makefile" from lsm/csim/ I get the error:
Code
$:~/lsm/csim$ make
make[1]: Entering directory '/home/user/lsm/csim/src'
echo # define _VERSION_STRING_ "1.1" ? version.i
chmod 755 makedependencies
mex -O -cxx -f csim_mexopts.sh -c csimclass.cpp
.: 1341: csim_mexopts.sh: not found
make[1]: ***[csimclass.o] Error 2
make[1]: Leaving direcory 'home/use/lsm/csim/src'
make: *** [subdirs] Error 2
When I change the name of the file to ./csim_mexopts.sh instead (add the ./ to indicate current directory the thing starts to work. But I don't get why this change should be needed.
Then a similar thing happens every time I run a "make clean" followed by "make". This time it is unable to find the file ../../developreggen/bin/reggen. The terminal output is:
Code
$make clean
make[1]: Entering directory '/home/user/lsm/csim/src'
rm -f *.0 csim.mexglx *.i *.bj objectlist.txt
make[1]: Leaving directory '/home/user/lsm/csim/src'
$make -f Makefile
make[1]: Entering directory '/home/user/lsm/csim/src'
echo # define _VERSION_STRING_ "1.1" ? version.i
chmod 755 makedependencies
../../develop/reggen/bin/reggen RegGenFile
make[1]: ../../develop/reggen/bin/reggen: Command not found
make[1]: ***[classlist.i] Error 127
make[1]: Leaving direcory 'home/use/lsm/csim/src'
make[1]: ***[subdirs] Error2
I tried changing reggen to ./reggen and also to ../../develop to the absolute path. I have checked that reggen does exist and has the correct permissions:
Code
~/lsm/csim/src/$ ls -l ../../develop/reggen/bin/
total 4520
-rwxrwxrwx 1 user 2920797 2006-06-11 12:14 reggen
So as you can see, the file is there. Why is make not able to find it?
The Makefile in lsm/csim is:
Code
SUBDIRS=src
default: subdirs csim.mexglx csim.dll
subdirs: $(SUBDIRS)
@(for i in $(SUBDIRS); do $(MAKE) -C $$i; done)
documentation:
$(MAKE) -C documentation
csim.mexglx: src/csim.mexglx
cp src/csim.mexglx csim.mexglx
csim.dll:
cp src/csim.dll csim.dll
mrproper:
@(for i in $(SUBDIRS); do $(MAKE) -C $$i mrproper; done)
@rm -f csim.* install.m
clean: $(SUBDIRS)
@(for i in $(SUBDIRS); do $(MAKE) -C $$i clean; done)
@rm -f csim.dll csim.mexglx install.m
distclean: $(SUBDIRS)
@(for i in $(SUBDIRS); do $(MAKE) -C $$i distclean; done)
@rm -f *~
@rm -f demos/*.mat
@find . -name auto -exec rm -rf {} \;
And the Makefile in lsm/csim/src is:
Code
#
# CSIM Version
#
VERSION_STRING = "1.1"
#
# Build tools
#
MEX = mex
REGGEN = ../../develop/reggen/bin/reggen
#
# Default compile and link options
#
#COMPILEOPTS = -O -cxx
#LINKOPTS = -O -cxx
#
# Options for Matlab 6.5, GCC-3.4, GCC-4.0.2
#
# You have to modify the CXXFLAGS in the file csim_mexopts.sh in the glnx86 - section
# Insert the correct path to the libstdc++.a of your gcc version (default /usr/local/lib or /usr/lib )
#
COMPILEOPTS = -O -cxx -f csim_mexopts.sh
LINKOPTS = -O -cxx -f csim_mexopts.sh
#
# Options for Matlab 7.2, GCC-3.4, GCC-4.0.2
#
# You have to modify the CXXFLAGS in the file csim_mexopts.sh in the glnx86 - section
# Insert the correct path to the libstdc++.a of your gcc version (default /usr/local/lib or /usr/lib )
#
#COMPILEOPTS = -O -cxx -f csim_mex72_opts.sh
#LINKOPTS = -O -cxx -f csim_mex72_opts.sh
#
# here are all the objects
#
OBJECTS = csimclass.o \
csimmex.o \
randgen.o \
advanceable.o \
analogteacher.o \
cbhhouneuron.o \
cbhhouineuron.o \
staticspikingsynapse.o \
dynamicspikingsynapse.o \
dynamicglutamatesynapse.o \
dynamicglutamatesynapsesynchan.o \
staticglutamatesynapse.o \
staticglutamatesynapsesynchan.o \
glutamatesynapse.o \
glutamatesynapsesynchan.o \
staticstdpsynapse.o \
dynamicstdpsynapse.o \
stdpsynapse.o \
analogneuron.o \
analogsynapse.o \
staticanalogsynapse.o \
lifneuron.o \
lifneuronsynchan.o \
network.o \
neuron.o \
spikingneuron.o \
spikinginputneuron.o \
spikingsynapse.o \
spikingteacher.o \
synapse.o \
teacher.o \
recorder.o \
mexrecorder.o \
csimerror.o \
analoginputneuron.o \
sigmoidalneuron.o \
linearneuron.o \
cbneuron.o \
ionchannel.o \
viongate.o \
conciongate.o \
iongate.o \
activechannel.o \
ahp_channel.o \
synapticchannel.o \
mexnetwork.o \
forceable.o \
hh_squid_channels.o \
hh_neuron.o \
extinputneuron.o \
extoutsigmoidalneuron.o \
extoutlinearneuron.o \
generic_ion_gates.o \
specific_ion_channels.o \
specific_neurons.o \
specificouneurons.o \
activecachannel.o \
cbneuronst.o \
extoutlifneuron.o \
csiminputclass.o \
membranepatch.o \
membranepatchsimple.o \
ionbuffer.o \
ifbneuron.o \
izhi_neuron.o \
lifburstneuron.o \
filterfunction.o \
analogfilter.o \
triangularanalogfilter.o \
gaussiananalogfilter.o \
useranalogfilter.o \
spikefilter.o \
expspikefilter.o \
alphaspikefilter.o \
countspikefilter.o \
preprocessor.o \
pcapreprocessor.o \
linearpreprocessor.o \
discretizationpreprocessor.o \
mean_std_preprocessor.o \
algorithm.o \
linear_regression.o \
linear_classification.o \
physicalmodel.o \
armmodel.o \
readout.o \
analogfeedbackneuron.o \
cbstouneuron.o \
staticanalogcbsynapse.o \
staticspikingcbsynapse.o \
dynamicspikingcbsynapse.o \
TraubsHHNeuron.o
#
# the default rule
#
default: version.i filepermissions csim.mexglx install.m
version.i: Makefile Makefile.win
echo #define _VERSION_STRING_ $(VERSION_STRING) > version.i
filepermissions:
chmod 755 makedependencies
#
# the *.i files
#
classlist.i switch.i registerclasses.i: *.h
$(REGGEN) RegGenFile
@rm -rf def html
field-files:
$(REGGEN) RegGenFile
@rm -rf def html
#
# the rule how to make an *.o file from an *.cpp file
#
$(OBJECTS): %.o: %.cpp
$(MEX) $(COMPILEOPTS) -c $<
#
# how to make the mex file
#
csim.mexglx: $(OBJECTS) csim.cpp
$(MEX) -D_VERSION_STRING_\#\\\"${versionstring}\\\" $(LINKOPTS) csim.cpp $(OBJECTS);
#
# some default targets
#
clean:
rm -f *.o csim.mexglx *.i *.obj objectlist.txt
mrproper:
rm -f *.o csim.mexglx *.i *.obj install.m fields-* objectlist.txt
distclean:
rm -f *.o *.obj fields-*
build: clean filepermissions depend csim.mexglx install.m
#
# make the dependencies
#
depend:
./makedependencies
#
# make a command to compile the whole stuff from within matlab (for windows!)
#
install.m: Makefile install.tmpl objectlist.txt
@(sed -e s#_OBJECTS_#"`cat objectlist.txt`"# install.tmpl > install.m;)
objectlist.txt: Makefile
@echo ${OBJECTS} | tr ' ' '\n' | sed -e s/\\.o/\\.cpp/ | tr '\n' ' ' > objectlist.txt
# DO NOT DELETE THIS LINE -- make depend depends on it.
# the following dependencies are generated automatically by ./makedependencies
activecachannel.o: activecachannel.cpp
activechannel.o: activechannel.cpp activechannel.h ionchannel.h \
globaldefinitions.h advanceable.h csimclass.h membranepatchsimple.h \
spikingneuron.h neuron.h forceable.h csimlist.h synapsetarget.h \
spikingsynapse.h synapse.h iongate.h cbneuron.h membranepatch.h \
ionbuffer.h csimerror.h analoginputneuron.h analogneuron.h \
analogsynapse.h csiminputclass.h hh_squid_channels.h viongate.h
advanceable.o: advanceable.cpp advanceable.h csimclass.h \
globaldefinitions.h
ahp_channel.o: ahp_channel.cpp ahp_channel.h ionchannel.h \
globaldefinitions.h advanceable.h csimclass.h membranepatchsimple.h \
spikingneuron.h neuron.h forceable.h csimlist.h synapsetarget.h \
spikingsynapse.h synapse.h cbneuron.h membranepatch.h ionbuffer.h \
analogneuron.h analogsynapse.h csimerror.h
algorithm.o: algorithm.cpp algorithm.h csimerror.h csimclass.h \
globaldefinitions.h advanceable.h
alphaspikefilter.o: alphaspikefilter.cpp alphaspikefilter.h spikefilter.h \
filterfunction.h csimerror.h advanceable.h csimclass.h \
globaldefinitions.h spikingneuron.h neuron.h forceable.h csimlist.h \
synapsetarget.h spikingsynapse.h synapse.h
analogfeedbackneuron.o: analogfeedbackneuron.cpp analogfeedbackneuron.h \
analoginputneuron.h analogneuron.h neuron.h forceable.h advanceable.h \
csimclass.h globaldefinitions.h csimlist.h synapsetarget.h \
analogsynapse.h synapse.h csiminputclass.h csimerror.h
analogfilter.o: analogfilter.cpp analogfilter.h filterfunction.h \
csimerror.h advanceable.h csimclass.h globaldefinitions.h
analoginputneuron.o: analoginputneuron.cpp analoginputneuron.h \
analogneuron.h neuron.h forceable.h advanceable.h csimclass.h \
globaldefinitions.h csimlist.h synapsetarget.h analogsynapse.h \
synapse.h csiminputclass.h csimerror.h
analogneuron.o: analogneuron.cpp analogneuron.h neuron.h forceable.h \
advanceable.h csimclass.h globaldefinitions.h csimlist.h \
synapsetarget.h analogsynapse.h synapse.h csimerror.h
analogsynapse.o: analogsynapse.cpp analogsynapse.h synapse.h \
advanceable.h csimclass.h globaldefinitions.h neuron.h forceable.h \
csimlist.h synapsetarget.h
analogteacher.o: analogteacher.cpp analogteacher.h teacher.h \
advanceable.h csimclass.h globaldefinitions.h csimlist.h analogneuron.h \
neuron.h forceable.h synapsetarget.h analogsynapse.h synapse.h \
csiminputclass.h csimerror.h
armmodel.o: armmodel.cpp armmodel.h physicalmodel.h csimerror.h \
csimclass.h globaldefinitions.h advanceable.h modelinput.h \
analogsynapse.h synapse.h neuron.h forceable.h csimlist.h \
synapsetarget.h readout.h analogfilter.h filterfunction.h spikefilter.h \
spikingneuron.h spikingsynapse.h preprocessor.h algorithm.h \
/usr/local/matlab/extern/include/mat.h \
/usr/local/matlab/extern/include/matrix.h \
/usr/local/matlab/extern/include/tmwtypes.h
cbhhouineuron.o: cbhhouineuron.cpp randgen.h cbhhouineuron.h cbneuron.h \
spikingneuron.h neuron.h forceable.h advanceable.h csimclass.h \
globaldefinitions.h csimlist.h synapsetarget.h spikingsynapse.h \
synapse.h ionchannel.h membranepatchsimple.h membranepatch.h \
ionbuffer.h specific_ion_channels.h viongate.h iongate.h conciongate.h \
activechannel.h activecachannel.h csimerror.h
cbhhouneuron.o: cbhhouneuron.cpp randgen.h cbhhouneuron.h cbneuron.h \
spikingneuron.h neuron.h forceable.h advanceable.h csimclass.h \
globaldefinitions.h csimlist.h synapsetarget.h spikingsynapse.h \
synapse.h ionchannel.h membranepatchsimple.h membranepatch.h \
ionbuffer.h specific_ion_channels.h viongate.h iongate.h conciongate.h \
activechannel.h activecachannel.h csimerror.h
cbneuron.o: cbneuron.cpp randgen.h cbneuron.h spikingneuron.h neuron.h \
forceable.h advanceable.h csimclass.h globaldefinitions.h csimlist.h \
synapsetarget.h spikingsynapse.h synapse.h ionchannel.h \
membranepatchsimple.h membranepatch.h ionbuffer.h
cbneuronst.o: cbneuronst.cpp randgen.h cbneuronst.h cbneuron.h \
spikingneuron.h neuron.h forceable.h advanceable.h csimclass.h \
globaldefinitions.h csimlist.h synapsetarget.h spikingsynapse.h \
synapse.h ionchannel.h membranepatchsimple.h membranepatch.h \
ionbuffer.h
cbstouneuron.o: cbstouneuron.cpp randgen.h cbstouneuron.h cbneuronst.h \
cbneuron.h spikingneuron.h neuron.h forceable.h advanceable.h \
csimclass.h globaldefinitions.h csimlist.h synapsetarget.h \
spikingsynapse.h synapse.h ionchannel.h membranepatchsimple.h \
membranepatch.h ionbuffer.h
conciongate.o: conciongate.cpp conciongate.h advanceable.h csimclass.h \
globaldefinitions.h membranepatch.h spikingneuron.h neuron.h \
forceable.h csimlist.h synapsetarget.h spikingsynapse.h synapse.h \
ionchannel.h membranepatchsimple.h ionbuffer.h iongate.h csimerror.h
countspikefilter.o: countspikefilter.cpp countspikefilter.h spikefilter.h \
filterfunction.h csimerror.h advanceable.h csimclass.h \
globaldefinitions.h spikingneuron.h neuron.h forceable.h csimlist.h \
synapsetarget.h spikingsynapse.h synapse.h
csimclass.o: csimclass.cpp csimclass.h globaldefinitions.h csimerror.h \
classlist.i registerclasses.i
csim.o: csim.cpp csimmex.h /usr/local/matlab/extern/include/mex.h \
/usr/local/matlab/extern/include/matrix.h \
/usr/local/matlab/extern/include/tmwtypes.h globaldefinitions.h \
csimerror.h
csimerror.o: csimerror.cpp csimerror.h
csiminputclass.o: csiminputclass.cpp csiminputclass.h globaldefinitions.h \
csimlist.h csimerror.h
csimlist.o: csimlist.cpp csimlist.h
csimmex.o: csimmex.cpp csimmex.h /usr/local/matlab/extern/include/mex.h \
/usr/local/matlab/extern/include/matrix.h \
/usr/local/matlab/extern/include/tmwtypes.h globaldefinitions.h \
classlist.i csimerror.h mexnetwork.h network.h csimlist.h \
spikingsynapse.h synapse.h advanceable.h csimclass.h neuron.h \
forceable.h synapsetarget.h switch.i
discretizationpreprocessor.o: discretizationpreprocessor.cpp \
discretizationpreprocessor.h preprocessor.h csimerror.h csimclass.h \
globaldefinitions.h advanceable.h
dynamicanalogsynapse.o: dynamicanalogsynapse.cpp randgen.h \
dynamicanalogsynapse.h analogsynapse.h synapse.h advanceable.h \
csimclass.h globaldefinitions.h neuron.h forceable.h csimlist.h \
synapsetarget.h
dynamicglutamatesynapse.o: dynamicglutamatesynapse.cpp \
dynamicglutamatesynapse.h glutamatesynapse.h stdpsynapse.h \
spikingsynapse.h synapse.h advanceable.h csimclass.h \
globaldefinitions.h neuron.h forceable.h csimlist.h synapsetarget.h \
needspostspikesynapse.h spikingneuron.h dynamicsynapse.h
dynamicglutamatesynapsesynchan.o: dynamicglutamatesynapsesynchan.cpp \
dynamicglutamatesynapsesynchan.h glutamatesynapsesynchan.h \
stdpsynapse.h spikingsynapse.h synapse.h advanceable.h csimclass.h \
globaldefinitions.h neuron.h forceable.h csimlist.h synapsetarget.h \
needspostspikesynapse.h spikingneuron.h dynamicsynapse.h \
lifneuronsynchan.h lifneuron.h internalvoltageneuron.h
dynamicspikingcbsynapse.o: dynamicspikingcbsynapse.cpp \
dynamicspikingcbsynapse.h dynamicspikingsynapse.h spikingsynapse.h \
synapse.h advanceable.h csimclass.h globaldefinitions.h neuron.h \
forceable.h csimlist.h synapsetarget.h spikingneuron.h dynamicsynapse.h \
cbneuron.h ionchannel.h membranepatchsimple.h membranepatch.h \
ionbuffer.h csimerror.h
dynamicspikingsynapse.o: dynamicspikingsynapse.cpp \
dynamicspikingsynapse.h spikingsynapse.h synapse.h advanceable.h \
csimclass.h globaldefinitions.h neuron.h forceable.h csimlist.h \
synapsetarget.h spikingneuron.h dynamicsynapse.h
dynamicstdpsynapse.o: dynamicstdpsynapse.cpp dynamicstdpsynapse.h \
stdpsynapse.h spikingsynapse.h synapse.h advanceable.h csimclass.h \
globaldefinitions.h neuron.h forceable.h csimlist.h synapsetarget.h \
needspostspikesynapse.h spikingneuron.h dynamicsynapse.h
expspikefilter.o: expspikefilter.cpp expspikefilter.h spikefilter.h \
filterfunction.h csimerror.h advanceable.h csimclass.h \
globaldefinitions.h spikingneuron.h neuron.h forceable.h csimlist.h \
synapsetarget.h spikingsynapse.h synapse.h
extinputneuron.o: extinputneuron.cpp csimerror.h extinputneuron.h \
neuron.h forceable.h advanceable.h csimclass.h globaldefinitions.h \
csimlist.h synapsetarget.h analoginputneuron.h analogneuron.h \
analogsynapse.h synapse.h csiminputclass.h
extoutlifneuron.o: extoutlifneuron.cpp csimerror.h extoutlifneuron.h \
lifneuron.h spikingneuron.h neuron.h forceable.h advanceable.h \
csimclass.h globaldefinitions.h csimlist.h synapsetarget.h \
spikingsynapse.h synapse.h internalvoltageneuron.h
extoutlinearneuron.o: extoutlinearneuron.cpp extoutlinearneuron.h \
linearneuron.h analogneuron.h neuron.h forceable.h advanceable.h \
csimclass.h globaldefinitions.h csimlist.h synapsetarget.h \
analogsynapse.h synapse.h csimerror.h
extoutsigmoidalneuron.o: extoutsigmoidalneuron.cpp \
extoutsigmoidalneuron.h sigmoidalneuron.h analogneuron.h neuron.h \
forceable.h advanceable.h csimclass.h globaldefinitions.h csimlist.h \
synapsetarget.h analogsynapse.h synapse.h csimerror.h
filterfunction.o: filterfunction.cpp filterfunction.h csimerror.h \
advanceable.h csimclass.h globaldefinitions.h
forceable.o: forceable.cpp forceable.h advanceable.h csimclass.h \
globaldefinitions.h csimerror.h teacher.h csimlist.h
gaussiananalogfilter.o: gaussiananalogfilter.cpp gaussiananalogfilter.h \
analogfilter.h filterfunction.h csimerror.h advanceable.h csimclass.h \
globaldefinitions.h
generic_ion_gates.o: generic_ion_gates.cpp generic_ion_gates.h viongate.h \
advanceable.h csimclass.h globaldefinitions.h membranepatchsimple.h \
spikingneuron.h neuron.h forceable.h csimlist.h synapsetarget.h \
spikingsynapse.h synapse.h ionchannel.h iongate.h csimerror.h
glutamatesynapse.o: glutamatesynapse.cpp glutamatesynapse.h stdpsynapse.h \
spikingsynapse.h synapse.h advanceable.h csimclass.h \
globaldefinitions.h neuron.h forceable.h csimlist.h synapsetarget.h \
needspostspikesynapse.h spikingneuron.h lifneuron.h \
internalvoltageneuron.h csimerror.h
glutamatesynapsesynchan.o: glutamatesynapsesynchan.cpp \
glutamatesynapsesynchan.h stdpsynapse.h spikingsynapse.h synapse.h \
advanceable.h csimclass.h globaldefinitions.h neuron.h forceable.h \
csimlist.h synapsetarget.h needspostspikesynapse.h spikingneuron.h \
lifneuronsynchan.h lifneuron.h internalvoltageneuron.h csimerror.h
hh_neuron.o: hh_neuron.cpp hh_neuron.h cbneuron.h spikingneuron.h \
neuron.h forceable.h advanceable.h csimclass.h globaldefinitions.h \
csimlist.h synapsetarget.h spikingsynapse.h synapse.h ionchannel.h \
membranepatchsimple.h membranepatch.h ionbuffer.h hh_squid_channels.h \
viongate.h iongate.h activechannel.h
hh_squid_channels.o: hh_squid_channels.cpp hh_squid_channels.h viongate.h \
advanceable.h csimclass.h globaldefinitions.h membranepatchsimple.h \
spikingneuron.h neuron.h forceable.h csimlist.h synapsetarget.h \
spikingsynapse.h synapse.h ionchannel.h iongate.h activechannel.h
ifbneuron.o: ifbneuron.cpp randgen.h ifbneuron.h spikingneuron.h neuron.h \
forceable.h advanceable.h csimclass.h globaldefinitions.h csimlist.h \
synapsetarget.h spikingsynapse.h synapse.h mexnetwork.h \
/usr/local/matlab/extern/include/mex.h \
/usr/local/matlab/extern/include/matrix.h \
/usr/local/matlab/extern/include/tmwtypes.h network.h csimerror.h
ionbuffer.o: ionbuffer.cpp ionbuffer.h ionchannel.h globaldefinitions.h \
advanceable.h csimclass.h membranepatchsimple.h spikingneuron.h \
neuron.h forceable.h csimlist.h synapsetarget.h spikingsynapse.h \
synapse.h
ionchannel.o: ionchannel.cpp ionchannel.h globaldefinitions.h \
advanceable.h csimclass.h membranepatchsimple.h spikingneuron.h \
neuron.h forceable.h csimlist.h synapsetarget.h spikingsynapse.h \
synapse.h cbneuron.h membranepatch.h ionbuffer.h analoginputneuron.h \
analogneuron.h analogsynapse.h csiminputclass.h csimerror.h
iongate.o: iongate.cpp iongate.h advanceable.h csimclass.h \
globaldefinitions.h membranepatchsimple.h spikingneuron.h neuron.h \
forceable.h csimlist.h synapsetarget.h spikingsynapse.h synapse.h \
ionchannel.h csimerror.h
izhi_neuron.o: izhi_neuron.cpp randgen.h lifneuron.h spikingneuron.h \
neuron.h forceable.h advanceable.h csimclass.h globaldefinitions.h \
csimlist.h synapsetarget.h spikingsynapse.h synapse.h \
internalvoltageneuron.h mexnetwork.h \
/usr/local/matlab/extern/include/mex.h \
/usr/local/matlab/extern/include/matrix.h \
/usr/local/matlab/extern/include/tmwtypes.h network.h csimerror.h \
izhi_neuron.h
lifburstneuron.o: lifburstneuron.cpp randgen.h lifburstneuron.h \
spikingneuron.h neuron.h forceable.h advanceable.h csimclass.h \
globaldefinitions.h csimlist.h synapsetarget.h spikingsynapse.h \
synapse.h mexnetwork.h /usr/local/matlab/extern/include/mex.h \
/usr/local/matlab/extern/include/matrix.h \
/usr/local/matlab/extern/include/tmwtypes.h network.h csimerror.h
lifneuron.o: lifneuron.cpp randgen.h lifneuron.h spikingneuron.h neuron.h \
forceable.h advanceable.h csimclass.h globaldefinitions.h csimlist.h \
synapsetarget.h spikingsynapse.h synapse.h internalvoltageneuron.h \
csimerror.h
lifneuronsynchan.o: lifneuronsynchan.cpp randgen.h lifneuronsynchan.h \
csimclass.h globaldefinitions.h lifneuron.h spikingneuron.h neuron.h \
forceable.h advanceable.h csimlist.h synapsetarget.h spikingsynapse.h \
synapse.h internalvoltageneuron.h csimerror.h
linear_classification.o: linear_classification.cpp \
linear_classification.h algorithm.h csimerror.h csimclass.h \
globaldefinitions.h advanceable.h
linearneuron.o: linearneuron.cpp randgen.h linearneuron.h analogneuron.h \
neuron.h forceable.h advanceable.h csimclass.h globaldefinitions.h \
csimlist.h synapsetarget.h analogsynapse.h synapse.h
linearpreprocessor.o: linearpreprocessor.cpp linearpreprocessor.h \
preprocessor.h csimerror.h csimclass.h globaldefinitions.h \
advanceable.h
linear_regression.o: linear_regression.cpp linear_regression.h \
algorithm.h csimerror.h csimclass.h globaldefinitions.h advanceable.h
mean_std_preprocessor.o: mean_std_preprocessor.cpp \
mean_std_preprocessor.h preprocessor.h csimerror.h csimclass.h \
globaldefinitions.h advanceable.h
membranepatch.o: membranepatch.cpp randgen.h membranepatch.h \
spikingneuron.h neuron.h forceable.h advanceable.h csimclass.h \
globaldefinitions.h csimlist.h synapsetarget.h spikingsynapse.h \
synapse.h ionchannel.h membranepatchsimple.h ionbuffer.h \
activecachannel.h activechannel.h
membranepatchsimple.o: membranepatchsimple.cpp randgen.h \
membranepatchsimple.h spikingneuron.h neuron.h forceable.h \
advanceable.h csimclass.h globaldefinitions.h csimlist.h \
synapsetarget.h spikingsynapse.h synapse.h ionchannel.h
mexnetwork.o: mexnetwork.cpp mexnetwork.h \
/usr/local/matlab/extern/include/mex.h \
/usr/local/matlab/extern/include/matrix.h \
/usr/local/matlab/extern/include/tmwtypes.h globaldefinitions.h \
network.h csimlist.h spikingsynapse.h synapse.h advanceable.h \
csimclass.h neuron.h forceable.h synapsetarget.h mexrecorder.h \
recorder.h csimerror.h csimmex.h readout.h analogfilter.h \
filterfunction.h spikefilter.h spikingneuron.h preprocessor.h \
algorithm.h modelinput.h physicalmodel.h analogsynapse.h classlist.i \
switch.i
mexrecorder.o: mexrecorder.cpp mexrecorder.h \
/usr/local/matlab/extern/include/mex.h \
/usr/local/matlab/extern/include/matrix.h \
/usr/local/matlab/extern/include/tmwtypes.h recorder.h advanceable.h \
csimclass.h globaldefinitions.h spikingneuron.h neuron.h forceable.h \
csimlist.h synapsetarget.h spikingsynapse.h synapse.h
network.o: network.cpp globaldefinitions.h network.h csimlist.h \
spikingsynapse.h synapse.h advanceable.h csimclass.h neuron.h \
forceable.h synapsetarget.h csimerror.h spikingneuron.h analogsynapse.h \
teacher.h recorder.h readout.h analogfilter.h filterfunction.h \
spikefilter.h preprocessor.h algorithm.h modelinput.h physicalmodel.h \
randgen.h csiminputclass.h
neuron.o: neuron.cpp neuron.h forceable.h advanceable.h csimclass.h \
globaldefinitions.h csimlist.h synapsetarget.h synapse.h csimerror.h
pcapreprocessor.o: pcapreprocessor.cpp pcapreprocessor.h preprocessor.h \
csimerror.h csimclass.h globaldefinitions.h advanceable.h
physicalmodel.o: physicalmodel.cpp physicalmodel.h csimerror.h \
csimclass.h globaldefinitions.h advanceable.h modelinput.h \
analogsynapse.h synapse.h neuron.h forceable.h csimlist.h \
synapsetarget.h readout.h analogfilter.h filterfunction.h spikefilter.h \
spikingneuron.h spikingsynapse.h preprocessor.h algorithm.h
preprocessor.o: preprocessor.cpp preprocessor.h csimerror.h csimclass.h \
globaldefinitions.h advanceable.h
randgen.o: randgen.cpp randgen.h
readout.o: readout.cpp readout.h advanceable.h csimclass.h \
globaldefinitions.h analogfilter.h filterfunction.h csimerror.h \
spikefilter.h spikingneuron.h neuron.h forceable.h csimlist.h \
synapsetarget.h spikingsynapse.h synapse.h preprocessor.h algorithm.h \
modelinput.h
recorder.o: recorder.cpp csimclass.h globaldefinitions.h recorder.h \
advanceable.h csimerror.h spikingneuron.h neuron.h forceable.h \
csimlist.h synapsetarget.h spikingsynapse.h synapse.h
sigmoidalneuron.o: sigmoidalneuron.cpp sigmoidalneuron.h analogneuron.h \
neuron.h forceable.h advanceable.h csimclass.h globaldefinitions.h \
csimlist.h synapsetarget.h analogsynapse.h synapse.h randgen.h
specific_ion_channels.o: specific_ion_channels.cpp \
specific_ion_channels.h viongate.h advanceable.h csimclass.h \
globaldefinitions.h membranepatchsimple.h spikingneuron.h neuron.h \
forceable.h csimlist.h synapsetarget.h spikingsynapse.h synapse.h \
ionchannel.h iongate.h conciongate.h membranepatch.h ionbuffer.h \
activechannel.h activecachannel.h csimerror.h cbneuron.h \
analoginputneuron.h analogneuron.h analogsynapse.h csiminputclass.h
specific_neurons.o: specific_neurons.cpp specific_neurons.h cbneuronst.h \
cbneuron.h spikingneuron.h neuron.h forceable.h advanceable.h \
csimclass.h globaldefinitions.h csimlist.h synapsetarget.h \
spikingsynapse.h synapse.h ionchannel.h membranepatchsimple.h \
membranepatch.h ionbuffer.h ahp_channel.h specific_ion_channels.h \
viongate.h iongate.h conciongate.h activechannel.h activecachannel.h \
csimerror.h mexnetwork.h /usr/local/matlab/extern/include/mex.h \
/usr/local/matlab/extern/include/matrix.h \
/usr/local/matlab/extern/include/tmwtypes.h network.h
specificouneurons.o: specificouneurons.cpp specificouneurons.h \
cbstouneuron.h cbneuronst.h cbneuron.h spikingneuron.h neuron.h \
forceable.h advanceable.h csimclass.h globaldefinitions.h csimlist.h \
synapsetarget.h spikingsynapse.h synapse.h ionchannel.h \
membranepatchsimple.h membranepatch.h ionbuffer.h ahp_channel.h \
specific_ion_channels.h viongate.h iongate.h conciongate.h \
activechannel.h activecachannel.h csimerror.h mexnetwork.h \
/usr/local/matlab/extern/include/mex.h \
/usr/local/matlab/extern/include/matrix.h \
/usr/local/matlab/extern/include/tmwtypes.h network.h
spikefilter.o: spikefilter.cpp spikefilter.h filterfunction.h csimerror.h \
advanceable.h csimclass.h globaldefinitions.h spikingneuron.h neuron.h \
forceable.h csimlist.h synapsetarget.h spikingsynapse.h synapse.h
spikinginputneuron.o: spikinginputneuron.cpp spikinginputneuron.h \
spikingneuron.h neuron.h forceable.h advanceable.h csimclass.h \
globaldefinitions.h csimlist.h synapsetarget.h spikingsynapse.h \
synapse.h csiminputclass.h csimerror.h
spikingneuron.o: spikingneuron.cpp spikingneuron.h neuron.h forceable.h \
advanceable.h csimclass.h globaldefinitions.h csimlist.h \
synapsetarget.h spikingsynapse.h synapse.h stdpsynapse.h \
needspostspikesynapse.h network.h
spikingsynapse.o: spikingsynapse.cpp randgen.h spikingneuron.h neuron.h \
forceable.h advanceable.h csimclass.h globaldefinitions.h csimlist.h \
synapsetarget.h spikingsynapse.h synapse.h csimerror.h lifneuron.h \
internalvoltageneuron.h
spikingteacher.o: spikingteacher.cpp spikingteacher.h teacher.h \
advanceable.h csimclass.h globaldefinitions.h csimlist.h \
spikingneuron.h neuron.h forceable.h synapsetarget.h spikingsynapse.h \
synapse.h csiminputclass.h csimerror.h
staticanalogcbsynapse.o: staticanalogcbsynapse.cpp \
staticanalogcbsynapse.h analogsynapse.h synapse.h advanceable.h \
csimclass.h globaldefinitions.h neuron.h forceable.h csimlist.h \
synapsetarget.h lifneuron.h spikingneuron.h spikingsynapse.h \
internalvoltageneuron.h cbneuron.h ionchannel.h membranepatchsimple.h \
membranepatch.h ionbuffer.h randgen.h csimerror.h
staticanalogsynapse.o: staticanalogsynapse.cpp staticanalogsynapse.h \
analogsynapse.h synapse.h advanceable.h csimclass.h globaldefinitions.h \
neuron.h forceable.h csimlist.h synapsetarget.h randgen.h
staticglutamatesynapse.o: staticglutamatesynapse.cpp \
staticglutamatesynapse.h glutamatesynapse.h stdpsynapse.h \
spikingsynapse.h synapse.h advanceable.h csimclass.h \
globaldefinitions.h neuron.h forceable.h csimlist.h synapsetarget.h \
needspostspikesynapse.h
staticglutamatesynapsesynchan.o: staticglutamatesynapsesynchan.cpp \
staticglutamatesynapsesynchan.h glutamatesynapsesynchan.h stdpsynapse.h \
spikingsynapse.h synapse.h advanceable.h csimclass.h \
globaldefinitions.h neuron.h forceable.h csimlist.h synapsetarget.h \
needspostspikesynapse.h
staticspikingcbsynapse.o: staticspikingcbsynapse.cpp \
staticspikingcbsynapse.h staticspikingsynapse.h globaldefinitions.h \
spikingsynapse.h synapse.h advanceable.h csimclass.h neuron.h \
forceable.h csimlist.h synapsetarget.h cbneuron.h spikingneuron.h \
ionchannel.h membranepatchsimple.h membranepatch.h ionbuffer.h \
csimerror.h
staticspikingsynapse.o: staticspikingsynapse.cpp staticspikingsynapse.h \
globaldefinitions.h spikingsynapse.h synapse.h advanceable.h \
csimclass.h neuron.h forceable.h csimlist.h synapsetarget.h
staticstdpsynapse.o: staticstdpsynapse.cpp staticstdpsynapse.h \
stdpsynapse.h spikingsynapse.h synapse.h advanceable.h csimclass.h \
globaldefinitions.h neuron.h forceable.h csimlist.h synapsetarget.h \
needspostspikesynapse.h
stdpsynapse.o: stdpsynapse.cpp stdpsynapse.h spikingsynapse.h synapse.h \
advanceable.h csimclass.h globaldefinitions.h neuron.h forceable.h \
csimlist.h synapsetarget.h needspostspikesynapse.h spikingneuron.h \
csimerror.h
synapse.o: synapse.cpp synapse.h advanceable.h csimclass.h \
globaldefinitions.h neuron.h forceable.h csimlist.h synapsetarget.h \
csimerror.h
synapticchannel.o: synapticchannel.cpp synapticchannel.h ionchannel.h \
globaldefinitions.h advanceable.h csimclass.h membranepatchsimple.h \
spikingneuron.h neuron.h forceable.h csimlist.h synapsetarget.h \
spikingsynapse.h synapse.h
teacher.o: teacher.cpp teacher.h advanceable.h csimclass.h \
globaldefinitions.h csimlist.h forceable.h csimerror.h network.h \
spikingsynapse.h synapse.h neuron.h synapsetarget.h
TraubsHHNeuron.o: TraubsHHNeuron.cpp TraubsHHNeuron.h cbneuron.h \
spikingneuron.h neuron.h forceable.h advanceable.h csimclass.h \
globaldefinitions.h csimlist.h synapsetarget.h spikingsynapse.h \
synapse.h ionchannel.h membranepatchsimple.h membranepatch.h \
ionbuffer.h viongate.h iongate.h activechannel.h
triangularanalogfilter.o: triangularanalogfilter.cpp \
triangularanalogfilter.h analogfilter.h filterfunction.h csimerror.h \
advanceable.h csimclass.h globaldefinitions.h
useranalogfilter.o: useranalogfilter.cpp useranalogfilter.h \
analogfilter.h filterfunction.h csimerror.h advanceable.h csimclass.h \
globaldefinitions.h
viongate.o: viongate.cpp viongate.h advanceable.h csimclass.h \
globaldefinitions.h membranepatchsimple.h spikingneuron.h neuron.h \
forceable.h csimlist.h synapsetarget.h spikingsynapse.h synapse.h \
ionchannel.h iongate.h csimerror.h
