9 More Discussions You Might Find Interesting
1. UNIX for Beginners Questions & Answers
Hi Team -
I hope everyone has been well!
I export a file from one of our source systems that gives me more information than I need. The way the file outputs, I need to extract certain strings at different positions on the file and echo them to another file.
I can do this in batch easily,... (2 Replies)
Discussion started by: SIMMS7400
2 Replies
2. Shell Programming and Scripting
I have a positions file with markers in col1 and position defined by chromosome and location in col2 and col3
m1 ch1 1
m2 ch1 5
m3 ch1 50
m4 ch2 567
m5 ch2 4567
m6 ch2 7766
m7 ch2 554433
m8 ch3 76
m9 ch3 456
m10 ch3 2315
Given a set of query marker, I would like to know what are the... (1 Reply)
Discussion started by: jianp83
1 Replies
3. Shell Programming and Scripting
Good afternoon all,
I want to ask how to change some letter in my file with other letter in spesific line
eg.
data.txt
1
1
1
0
0
0
0
for example i want to change the 4th line with character 1.
How could I do it by SED or AWK.
I have tried to run this code but actually did not... (3 Replies)
Discussion started by: weslyarfan
3 Replies
4. Shell Programming and Scripting
I do have a large tab delimited file with the following format
CCCCCGCCCCCCCCCCcCCCCCCCCCCCCCCCC 23 65 3 4
AAAAAAAAAAAAAAAAaAAAAAAAAAAAAAAAA 24 6 89 90
TGTTTTTTTTTTTTGGtTTTTTTTTTTTTTTTT 2 4 8 90
TTTT-TTTTTTTTTTTtTTTTTTTTTTTTTTTT 1 34 89 50
GGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGG 87 6 78 66... (8 Replies)
Discussion started by: Lucky Ali
8 Replies
5. Shell Programming and Scripting
Greetings.
I need to extract text between two character positions, e.g: all text between character 4921 and 6534.
The text blocks are FASTA-format sequence of whole chromosomes, so basically a million A, T, G, C, combinations. E.g:
>Chr_1
ACCTGTTCAACTCTCAGGACTCTCAGGTCAACTCTCAG... (3 Replies)
Discussion started by: Twinklefingers
3 Replies
6. Shell Programming and Scripting
Hello. I'm trying to insert text in various positions and I could only do that using pipes for each position.
Example:
cat file | sed -e 's#\(.\{5\}\)\(.*\)#\1:\2#g' | sed -e 's#\(.\{26\}\)\(.*\)#\1:\2#g'
Insert ":" at position 5 and 26.
it can be done in the same sentence, without using... (4 Replies)
Discussion started by: </kida>
4 Replies
7. Shell Programming and Scripting
I am attempting to replace positions 44-46 with YYY if positions 48-50 = XXX.
awk -F "" '{if (substr($0,48,3)=="XXX") $44="YYY"}1' OFS="" $filename > $tempfile
But this is not working, 44-46 is still spaces in my tempfile instead of YYY. Any suggestions would be greatly appreciated. (9 Replies)
Discussion started by: halplessProblem
9 Replies
8. Shell Programming and Scripting
Hi
i am having text file like this
40000201040005200213072009000000700000050744820906904421
40069300240005200713072009000000067400098543630000920442
i want to replace 9-16 positions of my txt file...by 1234567...in a single line command
i.e
0400052....should be replaced by... (2 Replies)
Discussion started by: suryanarayana
2 Replies
9. Shell Programming and Scripting
Hi,
I want to be able to list all the names in a file which begin with a capital letter, but I don't want it to list words that begin a new sentence. Is there any way round this?
Thanks for your help. (1 Reply)
Discussion started by: kev269
1 Replies