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SED and wildcards

 
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# 8  
Old 09-10-2010
MySQL
SED and wildcards are very good Smilie

Code:
# c=1 ; for i in $(sed -n '/>C/p' infile) ; do sed "s@$i@NewID$c@" infile|sed -n "/NewID$c/,+4p"; ((c++)) ;done
NewID1
ATTAGATACCCGGGTAGTCCACGCCCTAAACGATGTCAACTGGTTGTTGGGTCTTCACTGACTCAGTAACGAAGCTAACG
CGTGAAGTTGACCGCCTGGGGAGTACGGCCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAT
GATGTGGTTTAATTCGATGCAACGCGAAAAACCTTACCCACCTTTGACATGTACGGAATTTGCCAGAGATGGCTTAGTGC
TCGAAAGAGAACCGTAACACAGGTGCTGCATGG
NewID2
ATTAGATACCCCGGTAGTCCACGCCCTAAACGATGTCAACTGGTTGTTGGGTCTTCACTGACTCAGTAACGAAGCTAACG
CGTGAAGTTGACCGCCTGGGGAGTACGGCCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAT
GATGTGGTTTAATTCGATGCAACGCGAAAAACCTTACCCACCTTTGACATGTACGGAATTTGCCAGAGATGGCTTAGTGC
TCGAAAGAGAACCGTAACACAGGTGCTGCATGG
NewID3
ATTAGATACCCTGGTAGTCCACGCCCTAAACGATGTCAACTGGTTGTTGGGTCTTCACTGACTCAGTAACGAAGCTAACG
CGTGAAGTTGACCGCCTGGGGAGTACGGCCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAT
GATGTGGTTTAATTCGATGCAACGCGAAAAACCTTACCCACCTTTGACATGTACGGAATTTGCCAGAGATGGCTTAGTGC
TCGAAAGAGAACCGTAACACAGGTGCTGCATGG
NewID4
ATTAGATACCCGGGTAGTCCACGCCCTAAACGATGTCAACTGGTTGTTGGGTCTTCACTGACTCAGTAACGAAGCTAACG
CGTGAAGTTGACCGCCTGGGGAGTACGGCCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAT
GATGTGGTTTAATTCGATGCAACGCGAAAAACCTTACCCACCTTTGACATGTACGGAAGTTACCAGAGATGGTTTCGTGC
TCGAAAGAGAACCGTAACACAGGTGCTGCATGGCTGTCGTC
NewID5
ATTAGATACCCTGGTAGTCCACGCCCTAAACGATGTCAACTGGTTGTTGGGTCTTCACTGACTCAGTAACGAAGCTAACG
CGTGAAGTTGACCGCCTGGGGAGTACGGCCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAT
GATGTGGTTTAATTCGATGCAACGCGAAAAACCTTACCCACCTTTGACATGTACGGAAGTTACCAGAGATGGTTTCGTGC
TCGAAAGAGAACCGTAACACAGGTGCTGCATGGCTGTCG
NewID6
ATTAGATACCCCGGTAGTCCACGCCCTAAACGACGTCAACTGGTTGTTGGGTCTTAACTGACTCAGTAACGAAGCTAACG
CGTGAAGTTGACCGCCTGGGGAGTACGGCCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAT
GATGTGGTTTAATTCGATGCAACGCGAAAAACCTTACCCACCTTTGACATGTACGGAAGGATCCAGAGATGGATTTGTGC
TCGAAAGAGAACCGTAACACAGGTGCTGCATGGCTGTCGTC
NewID7
ATTAGATACCCTGGTAGTCCACGCCCTAAACGACGTCAACTGGTTGTTGGGTCTTAACTGACTCAGTAACGAAGCTAACG
CGTGAAGTTGACCGCCTGGGGAGTACGGCCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAT
GATGTGGTTTAATTCGATGCAACGCGAAAAACCTTACCCACCTTTGACATGTACGGAAGGATCCAGAGATGGATTTGTGC
TCGAAAGAGAACCGTAACACAGGTGCTGCATGGCTGTCG

# 9  
Old 09-10-2010
Another awk:
Code:
awk '/>/{$0=">NewID"++i}1' infile

This User Gave Thanks to Scrutinizer For This Post:
Xterra
# 10  
Old 09-11-2010
Code:
duplicated code, cleaned.

# 11  
Old 09-11-2010
Scrutinizer
Nice!
Thanks!
 
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