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Transpose and combining two files

 
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# 1  
Old 04-14-2010
Transpose and combining two files
Greetings.

I am a UNIX newbies.

I am currently facing difficulties dealing with a large data set and I would like to ask for helps. I have a input file like this:

Code:
           A B C D
SK001   1 2 1 2
SK002   2 2 1 1
SK003   1 1 1 1

Is there any possibility for me to have an output(transpose) like:
Code:
     SK001 SK002 SK003
A   1         2          1
B   2         2          1
C   1        1           1
D   2        1           1
...

and then i wish to combine this output file with another file, with FILE2 in the front few 6 columns
FILE2
Code:
P1 P2 P3 P4 P5 P6
1  1   0   0   0   1
0  1   0   0   0   0
0  0   0   0   0   0 
1  1   1   0   0   0

and the output should look something like this:
Code:
   P1 P2 P3 P4 P5 P6 SK001 SK002 SK003
   1  1   0   0   0   1  1         2          1 
   0  1   0   0   0   0  2         2          1
   0  0   0   0   0   0  1        1           1
   1  1   1   0   0   0  2        1           1

Code:
 SK001 SK002 SK003
A   1         2          1
B   2         2          1
C   1        1           1
D   2        1           1


It is too complicated for me and I do not know which language to use too. Please give me your opinion. Thank you very much.

Charles
Last edited by radoulov; 04-14-2010 at 04:51 AM.. Reason: Please use code tags!
# 2  
Old 04-14-2010
Hi,
I don't know the transpose of m x n matrix but i know n x n square matrix: As you wont need "A B C D" Row at the end:

your input
Code:
cat 1.txt 
A B C D
SK001 1 2 1 2
SK002 2 2 1 1
SK003 1 1 1 1

Code:
awk 'NR>1' 1.txt > 2.txt       
cat 2.txt 
SK001 1 2 1 2
SK002 2 2 1 1
SK003 1 1 1 1

Code:
awk '{
      for (f = 1; f <= NF; f++)
         a[NR, f] = $f
   }
   NF > nf { nf = NF }
   END {
      for (f = 1; f <= nf; f++)
         for (r = 1; r <= NR; r++)
            printf a[r, f] (r==NR ? RS : FS)
   }'  2.txt > 3.txt

Code:
cat 3.txt 
SK001 SK002 SK003
1 2 1
2 2 1
1 1 1
2 1 1

And

Code:
cat x.txt 
P1 P2  P3  P4  P5  P6
1  1   0   0   0   1
0  1   0   0   0   0
0  0   0   0   0   0 
1  1   1   0   0   0

last process is easy:

Code:
paste -d" " x.txt 3.txt 
P1 P2  P3  P4  P5  P6 SK001 SK002 SK003
1  1   0   0   0   1 1 2 1
0  1   0   0   0   0 2 2 1
0  0   0   0   0   0 1 1 1
1  1   1   0   0   0 2 1 1

Last edited by EAGL€; 04-14-2010 at 06:24 PM..
# 3  
Old 04-14-2010
Code:
$ cat infile1
           A B C D
SK001   1 2 1 2
SK002   2 2 1 1
SK003   1 1 1 1

Code:
$ cat infile2
P1 P2  P3  P4  P5  P6
1  1   0   0   0   1
0  1   0   0   0   0
0  0   0   0   0   0
1  1   1   0   0   0

Code:
$ awk '{for (i=1;i<=NF;i++) A[NR,i+s-1]=$i} NR==1{A[--s,1]=""} END{for (i=1;i<=NF;i++){for (j=1;j<=NR;j++) printf A[j,i]"\t"; print ""}}' s=2 infile1
        SK001   SK002   SK003
A       1       2       1
B       2       2       1
C       1       1       1
D       2       1       1

Code:
$ awk '{for (i=1;i<=NF;i++) A[NR,i+s-1]=$i} NR==1{A[--s,1]=""} END{for (i=1;i<=NF;i++){getline l<f;printf l"\t";for (j=2;j<=NR;j++) printf A[j,i]"\t"; print ""}}' s=2 infile1 f=infile2
P1 P2  P3  P4  P5  P6   SK001   SK002   SK003
1  1   0   0   0   1    1       2       1
0  1   0   0   0   0    2       2       1
0  0   0   0   0   0    1       1       1
1  1   1   0   0   0    2       1       1

 
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