10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hi,
Brand new to these forums, and I hope that someone can help me out.
I'm trying to run the following command in UNIX
java -jar GenomeAnalysisTK.jar -T SplitSamFile -dt NONE -R reference.fa -I my.bam --outputRoot /my/path/SampleFiles/Sample_
It executes the SplitSamFile from GATK, but I... (3 Replies)
Discussion started by: Wixaros
3 Replies
2. Shell Programming and Scripting
I wrote a simple test.java program in vi. I know it compiles correctly because I went into the directory where test.java was and compiled it and it created a java.class. I then ran test.java by staying in the same directory where it was and it worked great.
However, when i backed out of the... (3 Replies)
Discussion started by: syregnar86
3 Replies
3. UNIX for Advanced & Expert Users
Guys,
i need to check whether java file can be executed in my current unix system or not.
Can anyone please help me to get the correct command to check this.
My Unix system is HP-UX.
Thanks, (1 Reply)
Discussion started by: AraR87
1 Replies
4. UNIX for Dummies Questions & Answers
Hi
Im using MobaXterm Unix on my windows XP.I want to compile java in unix.I have installed java to the following path C:\Program Files\Java\jdk1.7.0_09\bin
In order to compile the java prog im typing the following command after entering into the bin directory:
C:\Program... (2 Replies)
Discussion started by: ak3141
2 Replies
5. Shell Programming and Scripting
Hi All,
I am trying to run a grep command which creates an output file.
Then I will run a java file which take that file and process that. My java file uses other java files and library jars.
I have tried below code but I am getting compilation error,it can not find other java files in same... (1 Reply)
Discussion started by: kmajumder
1 Replies
6. Programming
Greeings all
Im trying to excute a command from Java and direct the output to the main output screen or to another file .... can you please help with this ? can I use filewriter for this ?
Here is my code....
import java.io.BufferedReader;
import java.io.File;
import java.io.FileWriter;... (3 Replies)
Discussion started by: yahyaaa
3 Replies
7. Programming
Hi,
I need to uncompress a gzip and bzip file using java on unix solaris environment. I also need to retreive the header information of the file inorder to differentiate between gzip and bzip file. Please help
Pooja (0 Replies)
Discussion started by: wadhwa.pooja
0 Replies
8. UNIX for Dummies Questions & Answers
Hi,
can anyone let me know how to compile and run a C program in UNIX window? I just tried CC filename.c in ksh it is showing that
"ksh: cc: not found" error
and ./a.out is also not found.
can anyone let me know what should i do.
thanks in advance.:b: (4 Replies)
Discussion started by: janani_kalyan
4 Replies
9. UNIX for Dummies Questions & Answers
Hi.
I have a java program that create reports, and I would like to run it at each hour using crontab.
The main file is crome.jar located at /WebApps/Crome folder.
When I want to execute the program I use the next script (name crome):
#!/bin/sh
if ; then
... (1 Reply)
Discussion started by: karmariv
1 Replies
10. UNIX for Dummies Questions & Answers
I need to run .java from a directory.
i.e. c:\aaa\bbb\ccc.java
first I compile all the java using javac *.java under the c:\aaa\bbb directory, now I want to run this command under cd .. ,
Here is the command that I need to type..
java -classpath... (5 Replies)
Discussion started by: uci
5 Replies
run a java file on UNIX?