10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Have you tried running the command below? On the same RHEl 6.8 or 6.6. It will give you different output.
find . -maxdepth 1 -ctime -7 -type f
rpm -qa|grep find
findutils-4.4.2-9.el6.x86_64
# cat /etc/redhat-release
Red Hat Enterprise Linux Server release 6.8 (Santiago)
# (6 Replies)
Discussion started by: invinzin21
6 Replies
2. Shell Programming and Scripting
The problem is this one. I tar and gzip files on remote server
find . -ctime -1 | tar -cvf transfer_dmz_start_daily.tar *${Today}*.*;
Command
find . -ctime -1
Doesn't find files without extension
.csv .txt
I have to collect all files for current day, when the program... (1 Reply)
Discussion started by: digioleg54
1 Replies
3. Shell Programming and Scripting
The problem is this one. I tar and gzip files on remote server
Code:
find . -ctime -1 | tar -cvf transfer_dmz_start_daily.tar *${Today}*.*;
Command
Code:
find . -ctime -1
Doesn't find files without extension
Code:
.csv .txt
I have to collect all files for current... (1 Reply)
Discussion started by: digioleg54
1 Replies
4. Answers to Frequently Asked Questions
When I use the command find "/abc/xyz" -type f -ctime +30 getting the error as
find:"/abc/xyz /lost+found: Permission Denied"
I tired find "/abc/xyz" -type d \( ! lost+found \) -type f -ctime +30 The error is
find: paths must precede expression Usage: find
Tried find "/abc/xyz"... (1 Reply)
Discussion started by: anithab
1 Replies
5. Shell Programming and Scripting
I need assistance with following requirement, I am new to Unix.
I want to do the following task but stuck with file creation date(sysdate)
Following is the requirement
I need to create a script that will read the abc/xyz/klm folder and look for *.err files for that day’s date and then send an... (4 Replies)
Discussion started by: PreetArul
4 Replies
6. Shell Programming and Scripting
startdate="2012_07_04-16:14:4"
path1="/home/drdos/sample"
days=0
find $path1 -name "*$startdate*" > teste.txt
while
do
find $path1 -name "*.zip" ctime $days > teste.txt
days=`expr $days + 1`
done
echo " Files that are near the string u search are on teste.txt"Hi to... (2 Replies)
Discussion started by: drd0spt
2 Replies
7. Shell Programming and Scripting
Hello people!
I would like to create one script following this stage
I have one directory with 100 files
File001
File002
...
File100
(This is the format of content of the 100 files)
2012/03/10 12:56:50:221875936 1292800448912 12345 0x00 0x04 0
then I have one... (0 Replies)
Discussion started by: Abv_mx81
0 Replies
8. Shell Programming and Scripting
I know that find -ctime +1 will find ALL files that have been modified
that are greater than 1 day old and -ctime 1 will find files that are
ONLY 1 day old -ctime -1 mean files that are less than a day old?
Can find actually use this granularity? (5 Replies)
Discussion started by: BeefStu
5 Replies
9. Shell Programming and Scripting
find . -type f -name "*.sql" -print|xargs perl -i -pe 's/pattern/replaced/g'
this is simple logic to find and replace in multiple files & folders
Hope this helps.
Thanks
Zaheer (0 Replies)
Discussion started by: Zaheer.mic
0 Replies
10. Shell Programming and Scripting
Can any one tell me how to find out ctime , mtime ,atime for a file/directory on unix.
Cheers,
Nilesh (5 Replies)
Discussion started by: nilesrex
5 Replies
Bio::Graphics::Wiggle::Loader(3pm) User Contributed Perl Documentation Bio::Graphics::Wiggle::Loader(3pm)
SYNOPSIS
my $loader = Bio::Graphics::Wiggle::Loader->new('/base/directory/for/wigfiles','wibfilename');
my $fh = IO::File->new('uploaded_file.txt');
$loader->load($fh);
my $gff3_file = $loader->featurefile('gff3',$method,$source);
my $featurefile = $loader->featurefile('featurefile');
USAGE
This module loads Bio::Graphics::Wiggle files from source files that use Jim Kent's "WIG" format:
http://genome.ucsc.edu/google/goldenPath/help/wiggle.html
Several data sets can be grouped together in a single WIG source file. The load() method accepts the path to a WIG source file, and will
create one or more .wib ("wiggle binary") databases of quantitative data in the directory indicated when you created the loader. Call the
featurefile() method to return a text file in either GFF3 or Bio::Graphics::FeatureFile format, suitable for loading into a gbrowse
database.
METHODS
$loader = Bio::Graphics::Wiggle::Loader->new('/base/directory' [,'my_data'])
Create a new loader. The first argument specifies the base directory in which the loaded .wib files will be created. The second
argument specifies the base name for the created .wib files, or "track" if not specified.
$loader->load($fh)
Load the data from a source WIG file opened on a filehandle.
$data = $loader->featurefile($type [,$method,$source])
Return the data corresponding to a GFF3 or Bio::Graphics::FeatureFile. The returned file will have one feature per WIG track, and a
properly formatted "wigfile" attribute that directs Bio::Graphics to the location of the quantitative data.
$type is one of "gff3" or "featurefile". In the case of "gff3", you may specify an optional method and source for use in describing
each feature. In the case of "featurefile", the returned file will contain GBrowse stanzas that describe a reasonable starting format
to display the data.
$loader->allow_sampling(1)
If allow_sampling() is passed a true value, then very large files (more than 5 MB) will undergo a sampling procedure to find their
minimum and maximum values and standard deviation. Otherwise, file will be read in its entirety to generate those statistics.
EXTENSIONS
Several extensions to the WIG format "track" declaration are recognized.
transform=<transform>
Specify a transform to be performed on all numeric data within this track prior to loading into the binary wig file. Currently, the
following three declarations are recognized:
transform=logtransform y' = 0 for y == 0
y' = log(y) for y > 0
y' = -log(-y) for y < 0
transform=logsquared y' = log(y**2) for y != 0
y' = 0 for y == 0
transform=none y' = y (no transform - the default)
trim=<trim>
Specify a trimming function to be performed on the data prior to scaling. Currently, the following trim functions are recognized:
trim=stdev1 trim to plus/minus 1 standard deviation of the mean
trim=stdev2 trim to plus/minus 2 standard deviations of the mean (default)
trim=stdevN trim to plus/minus N standard deviations of the mean
trim=none no trimming
Example entended track declaration:
track type=wiggle_0 name="example" description="20 degrees, 2 hr"
trim=stdev2 transform=logsquared
SEE ALSO
Bio::Graphics::Wiggle, Bio::Graphics::Glyph::wiggle_xyplot, Bio::Graphics::Glyph::wiggle_density, Bio::Graphics::Panel,
Bio::Graphics::Glyph, Bio::Graphics::Feature, Bio::Graphics::FeatureFile
AUTHOR
Lincoln Stein <lstein@cshl.org>.
Copyright (c) 2007 Cold Spring Harbor Laboratory
This package and its accompanying libraries is free software; you can redistribute it and/or modify it under the terms of the GPL (either
version 1, or at your option, any later version) or the Artistic License 2.0. Refer to LICENSE for the full license text. In addition,
please see DISCLAIMER.txt for disclaimers of warranty.
perl v5.14.2 2012-02-20 Bio::Graphics::Wiggle::Loader(3pm)