10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hi,
I have a file with multiple lines(fixed width dat file). I want to search for '02' in the positions 45-46 and if available, in that lines, I need to replace value in position 359 with blank. As I am new to unix, I am not able to figure out how to do this. Can you please help me to achieve... (9 Replies)
Discussion started by: Pradhikshan
9 Replies
2. UNIX for Dummies Questions & Answers
How do we append the file name to fasta file headers in multiple fasta-files in Linux? (10 Replies)
Discussion started by: Mauve
10 Replies
3. Shell Programming and Scripting
I have two files. File1 is shown below.
>153L:B|PDBID|CHAIN|SEQUENCE
RTDCYGNVNRIDTTGASCKTAKPEGLSYCGVSASKKIAERDLQAMDRYKTIIKKVGEKLCVEPAVIAGIISRESHAGKVL
KNGWGDRGNGFGLMQVDKRSHKPQGTWNGEVHITQGTTILINFIKTIQKKFPSWTKDQQLKGGISAYNAGAGNVRSYARM
DIGTTHDDYANDVVARAQYYKQHGY
>16VP:A|PDBID|CHAIN|SEQUENCE... (7 Replies)
Discussion started by: nelsonfrans
7 Replies
4. Shell Programming and Scripting
OS : Linux 2.6x
Shell : Korn
In a single file , how can I identify all the Uniqe values at a specific character position and length of each record ,
and simultaneously SPLIT the records of the file based on each of these values and write them in seperate files .
Lets say :
a) I want to... (4 Replies)
Discussion started by: kumarjt
4 Replies
5. Shell Programming and Scripting
Hi,
I am unable to find the right option to extract the data in the fixed width file.
sample data
abcd1234xgyhsyshijfkfk
hujk9876 io xgla
loki8787eljuwoejroiweo
dkfj9098 dja
Search based on position 8-9="xg" and print the entire row
output
... (4 Replies)
Discussion started by: onesuri
4 Replies
6. UNIX for Dummies Questions & Answers
Hi, I have a file1 of many long sequences, each preceded by a unique header line. file2 is 3-columns list: headers name, start position, end position. I'd like to extract the sequence region of file1 specified in file2.
Based on a post elsewhere, I found the code:
awk... (2 Replies)
Discussion started by: pathunkathunk
2 Replies
7. Shell Programming and Scripting
I have a file with thousands of sequences that looks like this:
I need to replace the headers using a second file
Thus, I will end up having the following file:
I am looking for an AWK script that I can easily plug in my current pipeline.
Any help will be greatly appreciated! (6 Replies)
Discussion started by: Xterra
6 Replies
8. UNIX for Dummies Questions & Answers
Hi,
I am new to unix. I want to delete 2 words placed at position say for example at 23rd and 45th position in a line. I used sed but couldnt achieve this.
Example: the file contains 2 lines
12345 98765 "12345" 876
12345 98765 "64578" 876
I want to delete " placed at position 13 and 19... (4 Replies)
Discussion started by: nbks2u
4 Replies
9. UNIX for Dummies Questions & Answers
Hi Guys,
While I was writing one shell script , I just got struck at this point.
I need to extract words from a file at some specified position and do some comparison operation and need to replace the extracted word with another word.
Eg : I like Orange very much.
I need to replace... (19 Replies)
Discussion started by: kuttu123
19 Replies
10. Shell Programming and Scripting
Hi ,
I have a typical situation. I have 4 files and with different headers (number of headers is varible ).
I need to make such a merged file which will have headers combined from all files (comman coluns should appear once only).
For example -
File 1
H1|H2|H3|H4
11|12|13|14
21|22|23|23... (1 Reply)
Discussion started by: marut_ashu
1 Replies