10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
In the awk below I am trying to print the entire line, along with the header row, if $2 is SNV or MNV or INDEL. If that condition is met or is true, and $3 is less than or equal to 0.05, then in $7 the sub pattern :GMAF= is found and the value after the = sign is checked. If that value is less than... (0 Replies)
Discussion started by: cmccabe
0 Replies
2. Shell Programming and Scripting
I have the following file
299899 chrX_299716_300082 196 78.2903 299991 chrX_299982_300000 18.2538 Tajd:0.745591 FayWu:-0.245701 T2:1.45
299899 chrX_299716_300082 196 78.2903 299991 chrX_299982_300000 18.2538 Tajd:0.745591 FayWu:-0.245701 T2:0.283
311027 chrX_310892_311162 300 91.6452... (2 Replies)
Discussion started by: jfern
2 Replies
3. Shell Programming and Scripting
Hi all,
I am new to using awk and am quickly discovering what a powerful pattern-recognition tool it is. However, I have what seems like a fairly basic task that I just can't figure out how to perform in one line. I want awk to find and print all the lines in which one of multiple patterns (e.g.... (8 Replies)
Discussion started by: elgo4
8 Replies
4. Shell Programming and Scripting
I have a file in below format:
file01.txt
TERM
TERM
TERM
ABC 12315 68.53 12042013 165144
ABC 12315 62.12 12042013 165145
ABC 12315 122.36 12052013 165146
ABC 12315 582.18 12052013 165147
ABC 12316 2.36 12052013 165141
ABC 12316 ... (8 Replies)
Discussion started by: alex2005
8 Replies
5. Shell Programming and Scripting
I am trying to extract a table of data (mysql query output) from a log file. I need to print everything below the header and not past the end of the table. I have spent many hours searching with little progress. I am matching the regexp +-\{99\} with no problem. I just can't figure out how to print... (5 Replies)
Discussion started by: godfreydanials
5 Replies
6. Shell Programming and Scripting
Mysql log has something like below:
I need a bash shell script that will do the following:
1) The script will scan the mysql.log file constantly in real time (something like tail -F mysql.log)
2) If it encounters 5 consecutive identical lines then it would invoke some commands (say... (4 Replies)
Discussion started by: proactiveaditya
4 Replies
7. Shell Programming and Scripting
Using awk, print all the lines where field 8 is equal to x
I really did try, but this awk thing is really hard to figure out.
file1.txt"Georgia","Atlanta","2011-11-02","x","","","",""
"California","Los Angeles","2011-11-03","x","","","",""... (2 Replies)
Discussion started by: charles33
2 Replies
8. Shell Programming and Scripting
Hi,
Here is my sample input
X 2 AAA
Y 3 BBB
Y 2 CCC
Z 4 DDD
In field 1, if the value of one line is same as that of next line, I want to concatenate the corresponding value of the second line in the third field with the value of the third field of first line. And I dont need the third... (2 Replies)
Discussion started by: polsum
2 Replies
9. Shell Programming and Scripting
Hi.
I have a tab separated file that has a couple nearly identical lines. When doing:
sort file | uniq > file.new
It passes through the nearly identical lines because, well, they still are unique.
a)
I want to look only at field x for uniqueness and if the content in field x is the... (1 Reply)
Discussion started by: rocket_dog
1 Replies
10. Shell Programming and Scripting
i want to write a shell script that correct a text file.for example if i have the input file:
"john has has 2 apples
anne has 3 oranges oranges"
i want that the output file be like this:
"john has 2 apples
anne has 3 oranges"
i've tried to read line by line from input text file into array... (11 Replies)
Discussion started by: cocostaec
11 Replies