I was trying to run a program that calls 8 processors (with max. RAM of 2 GB per processor). I want to run this program on my cluster that runs SGE. The cluster has 2 nodes, and each node has 62 cores, and 248GB/node. Currently, I use the scripts below, but the program (softx below) crashes out after a little while (it runs but exits without any exception) and I am wondering if I am doing something wrong. Here are my scripts:
Hello,
I'm working on a SGE cluster and trying to echo the variables passed to the qsub command.
My script is as follows
#!/bin/bash
#$ -V
#$ -cwd
#$ -pe make 10
if ; then
echo "Variable is not set"
else
echo "Variable says: $StatedUserName"
fi
and I run the... (1 Reply)
Hi,
I'm trying to edit my working bash script to an SGE script in order to submit it as a job to the cluster.
Currently I have:
#!/bin/bash
# Perform fastqc on files in a specified directory.
for ((j=1; j <=17; j++))
do
directory=/data4/una/batch"$j"/
... (0 Replies)
Hey all
Im looking to reduce the number of cpus available on a certain node in our cluster available for jobs using SGE.
i.e. we have one node that has 24 cpus available for jobs on SGE, i would like to reduce that to 16. Thanks (1 Reply)
hi
please how to know that a sun x4100 m2 server has one or two processors installed ?? the OS installed on this server is windows 2003 Enterprise Edition.
thanks (2 Replies)
Does anybody know of a good alternative to Sun Grid Engine? It seems that Oracle is now charging for this software. I am running a HPC cluster that has Solaris 10 machines and I am adding some nodes that will be running Ubuntu 10.04, eventually the Solaris machines will be migrating to Ubuntu. (0 Replies)
Hi,
Can somebody pls help me? I need to write 2 shell scripts in Sun Solaris operating system which would do this:
1. go to the specified directory - I am using alias for it at the moment
2. start the particular sql script with the output log as same as the script but with timestamp e. g.... (4 Replies)
03-31-2017
