10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I have this fastq file:
@M04961:22:000000000-B5VGJ:1:1101:9280:7106 1:N:0:86
GGGGGGGGGGGGCATGAAAACATACAAACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCAACAGCTTTATCAATACCATGAAAAATATCAACCACACCA
+test-1
GGGGGGGGGGGGGGGGGCCGGGGGFF,EDFFGEDFG,@DGGCGGEGGG7DCGGGF68CGFFFGGGG@CGDGFFDFEFEFF:30CGAFFDFEFF8CAF;;8... (10 Replies)
Discussion started by: Xterra
10 Replies
2. Shell Programming and Scripting
Hi,
I've data like these:
Gene1,Gene2 snp1
Gene3 snp2
Gene4 snp3
I'd like to split line if comma and then print remaining information for the respective gene.
My code:
awk '{
if($1 ~ /,/){
n = split($0, t, ",") (7 Replies)
Discussion started by: genome
7 Replies
3. Shell Programming and Scripting
I have a requirement to split a huge file to smaller text files based on first four characters which look like
ABCD
1234
DFGH
RREX
:
:
:
:
:
0000
Each of these records are OF EQUAL bytes with a different internal layout based on the above first digit identifier..
Any help to start... (5 Replies)
Discussion started by: etldev
5 Replies
4. UNIX for Dummies Questions & Answers
Hello I am new to scripts, codes, bash, terminal, etc.
I apologize this my be very scattered because I frankly don't have any idea where to begin and I have had trouble sleeping lately.
I have several 2GB files I wish to split.
This Code 00 00 01 BA ** ** ** ** ** ** ** ** C3 F8 00 00 01 BB 00... (17 Replies)
Discussion started by: PatrickE
17 Replies
5. Shell Programming and Scripting
Hi Experts.
I'm stuck with the below AWK code where i'm trying to move the records containing any special characters in the last field to a bad file.
awk -F, '{if ($NF ~ /^|^/) print >"goodfile";else print >"badfile"}' filename
sample data
1,abc,def,1234,A *
2,bed,dec,342,* A ... (6 Replies)
Discussion started by: shell_boy23
6 Replies
6. Shell Programming and Scripting
Hello Folks..
I need your help ..
here the example of my problem..i know its easy..i don't all the commands in unix to do this especiallly sed...here my string..
dwc2_dfg_ajja_dfhhj_vw_dec2_dfgh_dwq
desired output is..
dwc2_dfg_ajja_dfhhj
it's a simple task with tail... (5 Replies)
Discussion started by: victor369
5 Replies
7. Shell Programming and Scripting
Hello,
if i have file like this:
010000890306932455804 05306977653873 0520080417010520ISMS SMT ZZZZZZZZZZZZZOC30693599000 30971360000 ZZZZZZZZZZZZZZZZZZZZ202011302942311 010000890306946317387 05306977313623 0520080417010520ISMS SMT... (6 Replies)
Discussion started by: chriss_58
6 Replies
8. Shell Programming and Scripting
Hello everyone,
I'm writing a script to add a string to an XML file, right after a specified string that only occurs once in the file. For testing purposes I created a file 'testfile' that looks like this:
1
2
3
4
5
6
6
7
8
9
And this is the script as far as I've managed:
... (2 Replies)
Discussion started by: heliode
2 Replies
9. Shell Programming and Scripting
BEGIN{
printf ("%s\t%s\t%s\t\n", "First Char", "Last Char", "Total Chars");
}
{
chars = split($1, line, //);
charline = line;
firstchar = line;
lastchar = substr(charline,length(charline));
countchar = length(chars);
... (1 Reply)
Discussion started by: knc9233
1 Replies
10. Shell Programming and Scripting
Hello ,
I'm trying to split a file which contains a single very long line.
My aim is to split this single line each 120 characters.
I tried with the sed command :
`cat ${MYPATH}/${FILE}|sed -e :a -e 's/^.\{1,120\}$/&\n/;ta' >{MYPATH}/${DEST}`
but when I wc -l the destination file it is... (2 Replies)
Discussion started by: jerome_1664
2 Replies