openmpi - initialization failed


 
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Old 09-08-2012
openmpi - initialization failed

Hi everybody,

my problem is the following:
I'm trying to run an openmpi program on a cluster (atlasz.elte.hu, it's in hungarian, but you can try google translate),
but I always got this error:

Fatal error in MPI_Init: Other MPI error, error stack:
MPIR_Init_thread(394)...........: Initialization failed
MPID_Init(121)..................:
MPIDI_Populate_vc_node_ids(1219):
MPID_Get_max_node_id(798).......: PMI_KVS_Commit returned -1

I am doing it according to the manual, for example, here is my script:

#!/bin/bash

mpirun.openmpi /users/jkobori/boxfit/out/boxfit boxfitsettings.txt

which I am runnig with the sbatch -p hpc2009 -N 4 -B 2:4:1 s.sh line.
This is the way it should be done, but it doesn't work for me.
Can You help me out?

If any additional info is needed, please, tell me.

Regards,
Joe
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mkqdisk(8)						      Quorum Disk Management							mkqdisk(8)

NAME
mkqdisk - Cluster Quorum Disk Utility WARNING
Use of this command can cause the cluster to malfunction. SYNOPSIS
mkqdisk [-?|-h] | [-L] | [-f label] [-c device -l label] [-d [-d ...]] DESCRIPTION
The mkqdisk command is used to create a new quorum disk or display existing quorum disks accessible from a given cluster node. OPTIONS
-c device -l label Initialize a new cluster quorum disk. This will destroy all data on the given device. If a cluster is currently using that device as a quorum disk, the entire cluster will malfunction. Do not run this on an active cluster when qdiskd is running. Only one device on the SAN should ever have the given label; using multiple different devices is currently not supported (it is expected a RAID array is used for quorum disk redundancy). The label can be any textual string up to 127 characters - and is therefore enough space to hold a UUID created with uuidgen(1). -f label Find the cluster quorum disk with the given label and display information about it. -L Display information on all accessible cluster quorum disks. -d Increase debugging level. Specify multiple times for more information. Currently, specifying more than twice has no effect. SEE ALSO
qdisk(5), qdiskd(8), uuidgen(1) July 2006 mkqdisk(8)