openmpi - initialization failed


 
Thread Tools Search this Thread
Top Forums UNIX for Advanced & Expert Users openmpi - initialization failed
# 1  
Old 09-08-2012
openmpi - initialization failed

Hi everybody,

my problem is the following:
I'm trying to run an openmpi program on a cluster (atlasz.elte.hu, it's in hungarian, but you can try google translate),
but I always got this error:

Fatal error in MPI_Init: Other MPI error, error stack:
MPIR_Init_thread(394)...........: Initialization failed
MPID_Init(121)..................:
MPIDI_Populate_vc_node_ids(1219):
MPID_Get_max_node_id(798).......: PMI_KVS_Commit returned -1

I am doing it according to the manual, for example, here is my script:

#!/bin/bash

mpirun.openmpi /users/jkobori/boxfit/out/boxfit boxfitsettings.txt

which I am runnig with the sbatch -p hpc2009 -N 4 -B 2:4:1 s.sh line.
This is the way it should be done, but it doesn't work for me.
Can You help me out?

If any additional info is needed, please, tell me.

Regards,
Joe
Login or Register to Ask a Question

Previous Thread | Next Thread

10 More Discussions You Might Find Interesting

1. UNIX for Advanced & Expert Users

Trying to use a convoluted for loop with VLC and Parallel or OpenMPI with no success. Help?

I have about 12,000,000 mod files I'm trying to turn into a test of "unlimited cloud storage" by running them all through VLC and blowing them into mp3 files. I can get this to work serially but when trying to use openMPI or Parallel, something in the syntax is tripping it up some. Here is an... (1 Reply)
Discussion started by: sparticus414
1 Replies

2. Shell Programming and Scripting

Variable initialization

Hallo Team, I have a simple request and i would appreciate your help. I would like to use two dates in my script lets: A=$(date +"%d %B %Y") echo $A 23 June 2014 That's awesome now we cooking. Now i want B to be on the previous month eg: echo $B Should give me 23 May 2014 I would... (9 Replies)
Discussion started by: kekanap
9 Replies

3. Programming

Cannot run MPI job across nodes using OpenMPI in F17

I am new in Linux and clustering. I am setting up a Beowulf Cluster using several PCs according to this guide "Beowulf How-To" I have setup and configure accordingly except for NFS part. Because I am not requiring it for my application. I have set my ssh to login each other without password. I... (1 Reply)
Discussion started by: nsw1216
1 Replies

4. Shell Programming and Scripting

Initialization error

new to shell scripting. below line is showing error in script. ${parameter:=word} in the o/p first it shows the below error. word: not found. and then in next line print "word" ---------------- p2: word: not found. word --------------------------- OS is AIX and shell is... (12 Replies)
Discussion started by: scriptor
12 Replies

5. Shell Programming and Scripting

Declaring variables without initialization

I get an error in my shell script that line 1: )unexpected. Line 1 in my script (using sh by the way) is the variable I declared but did not initialize it. result= Is this wrong? How can I fix it? I am using the variable later in the program, so I figured I could just declare it first... (4 Replies)
Discussion started by: itech4814
4 Replies

6. Programming

Problem with OpenMPI

OK, I hope you can help me here: I'm trying to crack a hash using John the Ripper. (BindShell.Net: John The Ripper MPI Patch) I'm runnig it on a cluster system using OpenMPI. But it is not working properly. If i try to run it, i get the following error: Any idea what can be wrong? Happen on... (3 Replies)
Discussion started by: chrisperry
3 Replies

7. Shell Programming and Scripting

little confusion about variable initialization.

Whenever i execute the below scriptlet with out proper file name it deletes /tmp directory . I guess this is because value of variable a didnt get initialized and there for rm -rf /tmp/ get executed and entire /tmp directory get deleted. How would i avoid any empty variables to be used in... (9 Replies)
Discussion started by: pinga123
9 Replies

8. Programming

/usr/bin/ld: warning: libgfortran.so.1, needed by /opt/openmpi/lib/libmpi_f90.so, may

hello, i get these warnings on make(ing) /usr/bin/ld: warning: libgfortran.so.1, needed by /opt/openmpi/lib/libmpi_f90.so, may conflict with libgfortran.so.3 /usr/bin/ld: warning: libgfortran.so.1, needed by /usr/lib/gcc/x86_64-redhat-linux6E/4.3.2/../../../liblapack.a, may conflict with... (1 Reply)
Discussion started by: sreekar
1 Replies

9. Programming

Char initialization

Hi All, char a="\0"; a) a contains \0 a contains garbage value b) a contains \ a contains 0 a contains garbage value Pls, let me know correct result is a or b. I guess a. Thanks, Naga:cool: (2 Replies)
Discussion started by: Nagapandi
2 Replies

10. Programming

Struct Initialization

Hi We are using a code generator for initializing structures with the #define macro. Compiling it with the GCC 2.8.1 (with -ansi) it OK. But when we are using the SUN C 5.0 compiler it screams. Following is a code sample: #include <stdlib.h> #include <stdio.h> typedef struct TEST3 {... (4 Replies)
Discussion started by: amatsaka
4 Replies
Login or Register to Ask a Question
Hungarian(5)							File Formats Manual						      Hungarian(5)

NAME
Hungarian, hungarian - Introduction to Hungarian language support DESCRIPTION
This reference page describes the codeset, locale, device, and other kinds of support for the Hungarian language. Codesets The operating system supports the following coded character sets (codesets) for Hungarian by means of locales, codeset converters, or both: ISO 8859-2 (ISO Latin-2) ISO8859-2 is the string that represents this codeset in the names of locales and codeset converters. See iso8859-2(5) for more information. UCS-2, UCS-4, and UTF-8 UCS-2, UCS-4, ucs4, and UTF-8 are the strings that represent these encoding formats in the names of locales and codeset converters. See Unicode(5) for more information. PC code pages cp852 and cp1250 are the strings that represent these encoding formats in the names of codeset converters. See code_page(5) for more information. See the i18n_intro(5) and l10n_intro(5) reference pages for introductory information on codesets. The iconv_intro(5) reference page dis- cusses codeset converters and how to use them. Locales The operating system provides the following Hungarian locale: hu_HU.ISO8859-2, for Hungary This locale also exists under the name hu_HU.ISO8859-2@ucs4 for use by applications that need to convert file data in ISO8859-2 for- mat to UCS-4 process code to perform certain kinds of character operations. You can use the locale command (see locale(1)) to find out which locales are installed on your system. See i18n_intro(5) for information on setting locale from the operating system command line. For the Common Desktop Environment (CDE), you set locale by setting the session language. To do this, use the Language menu accessed from the Options button of the Login window. Keyboards The operating system supports the following VT style and PC style keyboards with Hungarian characters printed on the keys: ---------------------------------------------- VT Style (105/108 keys) PC Style (102 keys) ---------------------------------------------- LK401-BQ LK471-BQ LK411-BQ LK47W-BQ LK461-BQ LK97W-BQ LK46W-BQ PCXAL-HQ PCXAL-LQ PCXAL-PQ PCXAL-SQ ---------------------------------------------- For your keyboard to function correctly with your system, you must load a keyboard mapping table (keymap) that is appropriate for your key- board's model and language. If you load a keymap that does not correspond to your keyboard's model and language, your keyboard behavior is unpredictable. The label located on the bottom surface of a keyboard usually specifies its model (five letter code) and language (two let- ter code). See the keyboard(5) reference page for general information on keymaps and instructions for loading them in different formats. The following tables supply Hungarian-specific information that you need when loading keymaps. Selecting keymaps in xkb format: --------------------------------------------------------- For VT Style For PC Style Keyboard: Select: Keyboard: Select: --------------------------------------------------------- LK401-BQ lk401 LK471-BQ lk471bq or lk471 LK411-BQ lk411 LK47W-BQ lk471bq or lk471 LK461-BQ lk461 LK97W-BQ lk97wbq or lk97w LK46W-BQ lk461 PCXAL-HQ pcxalhq PCXAL-LQ pcxallq PCXAL-PQ pcxalpq PCXAL-SQ pcxalsq --------------------------------------------------------- Selecting keymaps in xmodmap format: -------------------------------------------------------------------- For VT Style For PC Style Keyboard: Select: Keyboard: Select: -------------------------------------------------------------------- LK401-BQ hungarian lk401bq LK471-BQ hungarian pcxalhq LK411-BQ hungarian lk411bq LK47W-BQ hungarian pcxalhq LK461-BQ hungarian lk411bq PCXAL-HQ hungarian pcxalhq LK46W-BQ hungarian lk411bq PCXAL-LQ hungarian pcxalhq PCXAL-PQ hungarian pcxalhq PCXAL-SQ hungarian pcxalhq -------------------------------------------------------------------- Keyboards can have keys with characters printed on both the left and right half of the keycap. The way you set or use your keyboard to send different sets of characters varies from one keyboard model to another. Furthermore, your keyboard allows you to enter more characters than those printed on the keycaps. Refer to the keyboard(5) reference page for information on how to enter characters. Printers The i18n_printing(5) reference page discusses printer-support options. The PostScript fonts available for languages supported by the ISO 8859-2 codeset are listed on the iso8859-2(5) reference page. SEE ALSO
Commands: locale(1) Others: code_page(5), i18n_intro(5), i18n_printing(5), iconv_intro(5), iso8859-2(5), keyboard(5), l10n_intro(5), Unicode(5) Writing Software for the International Market Hungarian(5)