openmpi - initialization failed


 
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Old 09-08-2012
openmpi - initialization failed

Hi everybody,

my problem is the following:
I'm trying to run an openmpi program on a cluster (atlasz.elte.hu, it's in hungarian, but you can try google translate),
but I always got this error:

Fatal error in MPI_Init: Other MPI error, error stack:
MPIR_Init_thread(394)...........: Initialization failed
MPID_Init(121)..................:
MPIDI_Populate_vc_node_ids(1219):
MPID_Get_max_node_id(798).......: PMI_KVS_Commit returned -1

I am doing it according to the manual, for example, here is my script:

#!/bin/bash

mpirun.openmpi /users/jkobori/boxfit/out/boxfit boxfitsettings.txt

which I am runnig with the sbatch -p hpc2009 -N 4 -B 2:4:1 s.sh line.
This is the way it should be done, but it doesn't work for me.
Can You help me out?

If any additional info is needed, please, tell me.

Regards,
Joe
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Fatal(3pm)						 Perl Programmers Reference Guide						Fatal(3pm)

NAME
Fatal - replace functions with equivalents which succeed or die SYNOPSIS
use Fatal qw(open close); sub juggle { . . . } import Fatal 'juggle'; DESCRIPTION
"Fatal" provides a way to conveniently replace functions which normally return a false value when they fail with equivalents which raise exceptions if they are not successful. This lets you use these functions without having to test their return values explicitly on each call. Exceptions can be caught using "eval{}". See perlfunc and perlvar for details. The do-or-die equivalents are set up simply by calling Fatal's "import" routine, passing it the names of the functions to be replaced. You may wrap both user-defined functions and overridable CORE operators (except "exec", "system" which cannot be expressed via prototypes) in this way. If the symbol ":void" appears in the import list, then functions named later in that import list raise an exception only when these are called in void context--that is, when their return values are ignored. For example use Fatal qw/:void open close/; # properly checked, so no exception raised on error if(open(FH, "< /bogotic") { warn "bogo file, dude: $!"; } # not checked, so error raises an exception close FH; AUTHOR
Lionel.Cons@cern.ch prototype updates by Ilya Zakharevich ilya@math.ohio-state.edu perl v5.8.0 2002-06-01 Fatal(3pm)