MarketWatch: The Persistence of Unix (ComputerWire)

 
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Old 06-18-2007
Java MarketWatch: The Persistence of Unix (ComputerWire)

In the physical world, a number of difference forces are at play, and each in turn displays supremacy, or at least relevance, at subatomic, atomic, molecular, and wider levels. The weak force allows quarks to change form, and enables, among other things, nuclear fusion inside the sun; the strong force binds the nuclei inside atoms together, and the electromagnetic force glues atoms and molecules ...

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BALLView(1)						      General Commands Manual						       BALLView(1)

NAME
BALLView - A free molecular modeling and molecular graphics tool SYNOPSIS
BALLView [Molecular-file] DESCRIPTION
BALLView BALLView provides fast OpenGL-based visualization of molecular structures, molecular mechanics methods (minimization, MD simula- tion using the AMBER and CHARMM force fields), calculation and visualization of electrostatic properties (FDPB). BALLView is based on BALL (Biochemical Algorithms Library) , which is currently being developed in the groups of Oliver Kohlbacher (Univer- sity of Tuebingen, Germany), Andreas Hildebrandt (Saarland University, Saarbruecken, Germany), and Hans-Peter Lenhof (Saarland University, Saarbruecken, Germany). BALL is an application framework in C++ that has been specifically designed for rapid software development in Molecular Modeling and Computational Molecular Biology. It provides an extensive set of data structures as well as classes for Molecular Mechanics, advanced solvation methods, comparison and analysis of protein structures, file import/export, and visualization. BALLView is available under the LGPL licence. Homepage: www.BALLView.org USAGE
To run BALLView, simply type: BALLView or BALLView file.pdp where file.pdb is your PDB file. BALLView also supports HIN, MOL, MOL2 and SD files. BALLView provides HTML documentation, that is available in the application itself (see Help menu). This package also includes Python example scripts, that can be run in BALLView. They can be found under /usr/share/BALL/PYTHON. AUTHOR
BALLView is copyright 1998-2009 by the BALL project group SEE ALSO
http://www.ballview.org 24 January 2009 BALLView(1)