Sun King Powered By 'Over-Arching' Desire to Eliminate the Digital Divide (RedNova)
By Stephen Foley 4.30am Scott McNealy retired last year. Now he's busier than ever. Bleary-eyed, he rouses himself from another night in a strange bed, this time in a hotel on the edge of Mumbai, India.
Hi Guys,
I am newbie here and greeting to all guys of unix forum, now I want to learn unix here.
I have query here, we have file where file has 20 line record, now i want display 10 to 15 line row record only, then how it possible. (5 Replies)
Hi gurus,
I have problem with android usb tethering (usb0 interface). I tried two phones HTC Desire C and HTC Desire S. With Desire C everything works as expected, usb0 automatically goes up and gains IP address and tethering is working (output bellow)
HTC Desire C:
Nov 6 23:32:36 HP-PC... (0 Replies)
Hello Unix gurus,
I have a txt file with single columns with n no of rows.like below
COLUMN1
=======
AAA
BBB
CCC
DDD
EEE
FFF
GGG
HHH
.
.
.
NNN. (10 Replies)
I currently have a shell script that creates Oracle databases configured the way we want them here. One part of it allows you to choose which file system to place the database files. This is the command which works.
This produces a list of file systems from which to choose. I have been... (1 Reply)
Discussion started by: sewood
1 Replies
5. Post Here to Contact Site Administrators and Moderators
This post is here because I couldn't think of putting it anywhere else, and also I imagine it will be deleted since we cannot set this sort of a precedent.
However I have to say Perderabo is a UNIX king. I have been a frequent user of these forums for over 2 years (under 2 different names) and... (5 Replies)
Bio::FeatureIO::bed(3pm) User Contributed Perl Documentation Bio::FeatureIO::bed(3pm)NAME
Bio::FeatureIO::bed - read/write features from UCSC BED format
SYNOPSIS
my $in = Bio::FeatureIO(-format => 'bed', -file => 'file.bed');
for my $feat ($in->next_feature) {
# do something with $feat (a Bio::SeqFeature::Annotated object)
}
my $out = Bio::FeatureIO(-format=>'bed');
for my $feat ($seq->get_seqFeatures) {
$out->write_feature($feat);
}
DESCRIPTION
See <http://www.genome.ucsc.edu/goldenPath/help/customTrack.html#BED>.
Currently for read and write only the first 6 fields (chr, start, end, name, score, strand) are supported.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Allen Day
Email allenday@ucla.edu
CONTRIBUTORS
Sendu Bala, bix@sendu.me.uk
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
_initialize
Title : _initialize
Function: initializes BED for reading/writing
Args : all optional:
name description
----------------------------------------------------------
-name the name for the BED track, stored in header
name defaults to localtime()
-description the description for the BED track, stored in
header. defaults to localtime().
-use_score whether or not the score attribute of
features should be used when rendering them.
the higher the score the darker the color.
defaults to 0 (false)
use_score
Title : use_score
Usage : $obj->use_score($newval)
Function: should score be used to adjust feature color when rendering? set to true if so.
Example :
Returns : value of use_score (a scalar)
Args : on set, new value (a scalar or undef, optional)
name
Title : name
Usage : $obj->name($newval)
Function: name of BED track
Example :
Returns : value of name (a scalar)
Args : on set, new value (a scalar or undef, optional)
description
Title : description
Usage : $obj->description($newval)
Function: description of BED track
Example :
Returns : value of description (a scalar)
Args : on set, new value (a scalar or undef, optional)
perl v5.14.2 2012-03-02 Bio::FeatureIO::bed(3pm)
