Study of Molecular Trapping by Gold Nanofinger Arrays on Surface-Enhanced Raman Substrates

 
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Old 01-25-2011
Study of Molecular Trapping by Gold Nanofinger Arrays on Surface-Enhanced Raman Substrates

HPL-2011-4 Study of Molecular Trapping by Gold Nanofinger Arrays on Surface-Enhanced Raman Substrates - Kim, Ansoon; Ou, Fung Suong; Ohlberg, Douglas A.A.; Hu, Min; Williams, R. Stanley; Li, Zhiyong
Keyword(s): SERS, XPS, molecule trapping, gold finger, nanoimprint lighography
Abstract: The binding of trans-1,2-bis(4-pyridyl)-ethylene (BPE) molecules on substrates arrayed with gold nanofingers has been studied by surface enhanced Raman spectroscopy (SERS) and angle-resolved x-ray photoelectron spectroscopy (AR-XPS). Based on the SERS and XPS results, BPE molecules are found to inte ...
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BALLView(1)						      General Commands Manual						       BALLView(1)

NAME
BALLView - A free molecular modeling and molecular graphics tool SYNOPSIS
BALLView [Molecular-file] DESCRIPTION
BALLView BALLView provides fast OpenGL-based visualization of molecular structures, molecular mechanics methods (minimization, MD simula- tion using the AMBER and CHARMM force fields), calculation and visualization of electrostatic properties (FDPB). BALLView is based on BALL (Biochemical Algorithms Library) , which is currently being developed in the groups of Oliver Kohlbacher (Univer- sity of Tuebingen, Germany), Andreas Hildebrandt (Saarland University, Saarbruecken, Germany), and Hans-Peter Lenhof (Saarland University, Saarbruecken, Germany). BALL is an application framework in C++ that has been specifically designed for rapid software development in Molecular Modeling and Computational Molecular Biology. It provides an extensive set of data structures as well as classes for Molecular Mechanics, advanced solvation methods, comparison and analysis of protein structures, file import/export, and visualization. BALLView is available under the LGPL licence. Homepage: www.BALLView.org USAGE
To run BALLView, simply type: BALLView or BALLView file.pdp where file.pdb is your PDB file. BALLView also supports HIN, MOL, MOL2 and SD files. BALLView provides HTML documentation, that is available in the application itself (see Help menu). This package also includes Python example scripts, that can be run in BALLView. They can be found under /usr/share/BALL/PYTHON. AUTHOR
BALLView is copyright 1998-2009 by the BALL project group SEE ALSO
http://www.ballview.org 24 January 2009 BALLView(1)