Login or Register to Ask a Question and Join Our Community


Ubuntu

How to convert full data matrix to linearised left data matrix?

Login to Discuss or Reply to this Discussion in Our Community

 
Thread Tools Search this Thread
Operating Systems Linux Ubuntu How to convert full data matrix to linearised left data matrix?
# 1  
Old 06-03-2011
How to convert full data matrix to linearised left data matrix?
Hi all,

Is there a way to convert full data matrix to linearised left data matrix?


e.g full data matrix


Code:
      Bh1 Bh2 Bh3 Bh4 Bh5 Bh6 Bh7
Bh1 0   0.241058    0.236129    0.244397    0.237479    0.240767    0.245245
Bh2 0.241058    0   0.240594    0.241931    0.241975    0.236266    0.239739
Bh3 0.236129    0.240594    0   0.24126 0.240514    0.237112    0.246041
Bh4 0.244397    0.241931    0.24126 0   0.245298    0.243085    0.248259
Bh5 0.237479    0.241975    0.240514    0.245298    0   0.241861    0.244328
Bh6 0.240767    0.236266    0.237112    0.243085    0.241861    0   0.241861
Bh7 0.245245    0.239739    0.246041    0.248259    0.244328    0.241861    0


linearized left data matrix


Code:

      Bh1 Bh2 Bh3 Bh4 Bh5 Bh6 Bh7
Bh1 0                       
Bh2 0.241058    0                   
Bh3 0.236129    0.240594    0               
Bh4 0.244397    0.241931    0.24126 0           
Bh5 0.237479    0.241975    0.240514    0.245298    0       
Bh6 0.240767    0.236266    0.237112    0.243085    0.241861    0   
Bh7 0.245245    0.239739    0.246041    0.248259    0.244328    0.241861    0


thanks
# 2  
Old 06-03-2011
try this..

Code:
awk ' { for(i=1; i<=NR; i++) print $i }' filename

This User Gave Thanks to itkamaraj For This Post:
evoll
# 3  
Old 06-03-2011
thanks. It does the work but then increase my manual work, as I get the file in this format

Code:
Bh1
0
Bh2
0.241058
0
Bh3
0.236129
0.240594
0
Bh4
0.244397
0.241931
0.24126
0
Bh5
0.237479
0.241975
0.240514
0.245298
0
Bh6
0.240767
0.236266
0.237112
0.243085
0.241861
0
Bh7
0.245245
0.239739
0.246041
0.248259
0.244328
0.241861
0

which i need to make manual!

any other way?

thanks
# 4  
Old 06-03-2011
try this...not tested
Code:
awk ' { for(i=1; i<=NR; i++) printf ("%s ",$i) if($i==0) printf("\n")}' filename

---------- Post updated at 02:59 PM ---------- Previous update was at 02:56 PM ----------

Code:
awk ' { for(i=1; i<=NR; i++){ printf ("%s ",$i) if($i==0) printf("\n")}}' filename

# 5  
Old 06-03-2011
Quote:
Originally Posted by itkamaraj
try this...not tested
Code:
awk ' { for(i=1; i<=NR; i++) printf ("%s ",$i) if($i==0) printf("\n")}' filename

---------- Post updated at 02:59 PM ---------- Previous update was at 02:56 PM ----------

Code:
awk ' { for(i=1; i<=NR; i++){ printf ("%s ",$i) if($i==0) printf("\n")}}' filename


sorry! it gives me 'syntax error'

thanks
# 6  
Old 06-03-2011
Hope this is what you are looking for
Code:
cgi@tioman> (/home/cgi) $ awk '{if(NR==1){print}else{for(i=1;i<=NF;i++){ printf "%s\t",$i ;if($i==0){printf "\n"; next} }}}' test.txt

      Bh1 Bh2 Bh3 Bh4 Bh5 Bh6 Bh7
Bh1     0
Bh2     0.241058        0
Bh3     0.236129        0.240594        0
Bh4     0.244397        0.241931        0.24126 0
Bh5     0.237479        0.241975        0.240514        0.245298        0
Bh6     0.240767        0.236266        0.237112        0.243085        0.241861        0
Bh7     0.245245        0.239739        0.246041        0.248259        0.244328        0.241861        0

This User Gave Thanks to kumaran_5555 For This Post:
evoll
# 7  
Old 06-03-2011
wow! thanks a lot. This is working perfectly.
Login or Register to Ask a Question

Previous Thread | Next Thread

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Convert data into tabular matrix

Hi There, I want to convert the following data into tabular matrix, based on column 4th and 5th, and output the column 10th value chr1 2804449 2804450 NACpG_1 window1 + chr1 2804443 2804475 1 chr1 2804450 2804451 NACpG_1 window2 + chr1 2804443 ... (3 Replies)
Discussion started by: ChiragNepal
3 Replies

2. Shell Programming and Scripting

[Solved] Converting the data into matrix with 0's and 1's

I have a file that contains 2 columns tag,pos cat input_file tag pos atg 10 ata 16 agt 15 agg 19 atg 17 agg 14 I have used following command to sort the file based on second column sort -k 2 input_file tag pos atg 10 agg 14 agt 15 ata 16 agg 19 atg 17 (2 Replies)
Discussion started by: raj_k
2 Replies

3. UNIX for Dummies Questions & Answers

Convert nxm Matrix into columns of data

Dear Unixers, I'm having some difficulty in converting an n x m data matrix into a dataset of 3 columns and nxm rows. As an example I want to convert this dataset 2 3 4 5 2 0.0 0.0 0.1 0.1 6 -0.3 2.0 0.0 0.3 7 -0.6 -1.1 0.5 0.3 9 -0.9 -4.1 -0.7 0.5 ... (2 Replies)
Discussion started by: tintin72
2 Replies

4. Shell Programming and Scripting

Reformatting data in matrix form

Hi, Some assistance with respect to the following problem will be very helpful. I want to reformat my dataset in the following manner for subsequent analysis. I have first column values (which repeat for each value of 2nd column) which are names, the second column specifies position ad the... (1 Reply)
Discussion started by: newbie83
1 Replies

5. Shell Programming and Scripting

convert data into matrix- awk

is it possible to count the number of keys based on state and cell and output it as a simple matrix. Ex: cell1-state1 has 2 keys cell3-state1 has 4 keys. Note: Insert 0 if no data available. input key states cell key1 state1 cell1 key1 state2 cell1 key1 ... (21 Replies)
Discussion started by: quincyjones
21 Replies

6. Shell Programming and Scripting

two-column data to matrix in AWK

Howdy, I need to convert an association data matrix, currently in a two-column format, into a matrix with numbers indicating the number of associations. I've been looking around for AWK code in the list, but could not find anything. Here's an example of what I want to perform: original... (10 Replies)
Discussion started by: sramirez
10 Replies

7. Shell Programming and Scripting

Invert Matrix of Data - Perl

I have columnar data in arrays perl, Example - @a = (1,2,3); @array1 = (A,B,C); @array2 = (D,E,F); @array3 = (I,R,T); I want the data to be formatted and printed as 1 A D I 2 B E F 3 C F T and so on... (8 Replies)
Discussion started by: dinjo_jo
8 Replies

8. Shell Programming and Scripting

extract data from a data matrix with filter criteria

Here is what old matrix look like, IDs X1 X2 Y1 Y2 10914061 -0.364613333 -0.362922333 0.001691 -0.450094667 10855062 0.845956333 0.860396667 0.014440333 1.483899333... (7 Replies)
Discussion started by: ssshen
7 Replies

9. Shell Programming and Scripting

Merge 70 files into one data matrix

Hi, I have a list of 70 files in a directory and I need to merge the content of each file into one big matrix file (71 columns x 3060 rows). Each file has the following format only two columns per file: unique identifier1 randomtext1 randomtext1 a 5 b 3 c 6 d 3 e 2... (11 Replies)
Discussion started by: labrazil
11 Replies

10. UNIX for Dummies Questions & Answers

changing data into matrix form

Hi, I have a file whose structure is like this 7 7 1 2 3 4 5 1 3 4 8 6 1 4 5 6 0 2 6 8 3 8 2 5 7 8 0 5 7 9 4 1 3 8 0 2 2 3 5 6 8 basically first two row tell the number of rows and column but the data following them are not arranged in that format. now i want to create another... (1 Reply)
Discussion started by: g0600014
1 Replies
Login or Register to Ask a Question