Unix and Linux Discussions Tagged with tab delimited file |
|
Thread / Thread Starter |
Last Post |
Replies |
Views |
Forum |
|
|
|
2 |
5,465 |
UNIX for Beginners Questions & Answers |
|
|
|
8 |
14,821 |
Programming |
|
|
|
1 |
4,832 |
Shell Programming and Scripting |
|
|
|
0 |
3,005 |
Shell Programming and Scripting |
|
|
|
1 |
6,495 |
Shell Programming and Scripting |
|
|
|
2 |
6,475 |
Shell Programming and Scripting |
|
|
|
3 |
5,266 |
Shell Programming and Scripting |
|
|
|
8 |
18,887 |
UNIX for Advanced & Expert Users |
|
|
|
8 |
10,324 |
Shell Programming and Scripting |
|
|
|
4 |
8,454 |
Shell Programming and Scripting |
|
|
|
9 |
12,300 |
Shell Programming and Scripting |
|
|
|
19 |
10,590 |
Shell Programming and Scripting |
|
|
|
16 |
69,909 |
UNIX for Dummies Questions & Answers |
CSV2MIPE(1) User Contributed Perl Documentation CSV2MIPE(1)
NAME
csv2mipe.pl - Generates MIPE file based on 3 tab-delimited files
based on MIPE version v1.1
arguments: * tab-delimited file with PCR-level data
* tab-delimited file with SNP-level data
* tab-delimited file with assay-level data
Columns in file with PCR-level data:
pcr_id
pcr_modified (might be multiple, divided by semi-colon ";")
pcr_project (might be multiple, divided by semi-colon ";")
pcr_researcher (might be multiple, divided by semi-colon ";")
pcr_species
source_type
source_id
design_seq
primer1_oligo
primer1_seq
primer1_tm
primer2_oligo
primer2_seq
primer2_tm
design_remark (might be multiple, divided by semi-colon ";")
use_seq
use_revcomp
use_remark (might be multiple, divided by semi-colon ";")
pcr_remark (might be multiple, divided by semi-colon ";")
Columns in file with SNP-level data:
pcr_id
snp_id
snp_pos
snp_amb
snp_remark (might be multiple, divided by semi-colon ";")
Columns in file with assay-level data:
pcr_id
snp_id
assay_id
assay_type
assay_enzyme
assay_oligo
assay_specific
assay_tail
assay_strand
assay_remark (might be multiple, divided by semi-colon ";")
SYNOPSIS
csv2mipe.pl <pcr_file.csv> <snp_file.csv> <assay_file.csv>
ADDITIONAL INFO
See http://mipe.sourceforge.net
AUTHOR
Jan Aerts (jan.aerts@bbsrc.ac.uk)
perl v5.14.2 2005-07-20 CSV2MIPE(1)