Unix and Linux Discussions Tagged with multiple |
|
Thread / Thread Starter |
Last Post |
Replies |
Views |
Forum |
|
|
|
3 |
5,325 |
UNIX for Beginners Questions & Answers |
|
|
|
4 |
8,399 |
UNIX for Beginners Questions & Answers |
|
|
|
2 |
8,388 |
Shell Programming and Scripting |
|
|
|
6 |
2,706 |
UNIX for Beginners Questions & Answers |
|
|
|
1 |
13,149 |
Shell Programming and Scripting |
|
|
|
1 |
16,826 |
Shell Programming and Scripting |
|
|
|
2 |
3,423 |
UNIX for Beginners Questions & Answers |
|
|
|
2 |
4,155 |
UNIX for Beginners Questions & Answers |
|
|
|
8 |
10,436 |
Shell Programming and Scripting |
|
|
|
0 |
11,060 |
Shell Programming and Scripting |
|
|
|
6 |
3,602 |
UNIX for Beginners Questions & Answers |
|
|
|
4 |
4,019 |
UNIX for Beginners Questions & Answers |
|
|
|
2 |
3,642 |
UNIX for Beginners Questions & Answers |
|
|
|
3 |
5,923 |
Shell Programming and Scripting |
|
|
|
2 |
4,258 |
UNIX for Beginners Questions & Answers |
|
|
|
8 |
5,470 |
Shell Programming and Scripting |
|
|
|
2 |
4,734 |
Shell Programming and Scripting |
|
|
|
2 |
3,531 |
UNIX for Beginners Questions & Answers |
|
|
|
1 |
9,891 |
UNIX for Beginners Questions & Answers |
|
|
|
8 |
5,118 |
UNIX for Beginners Questions & Answers |
|
|
|
15 |
4,869 |
UNIX for Beginners Questions & Answers |
|
|
|
8 |
3,915 |
UNIX for Beginners Questions & Answers |
|
|
|
5 |
2,652 |
UNIX for Beginners Questions & Answers |
|
|
|
4 |
1,882 |
UNIX for Beginners Questions & Answers |
|
|
|
2 |
3,222 |
UNIX for Beginners Questions & Answers |
|
|
|
4 |
1,666 |
UNIX for Beginners Questions & Answers |
|
|
|
17 |
5,390 |
UNIX for Beginners Questions & Answers |
|
|
|
1 |
11,241 |
UNIX for Beginners Questions & Answers |
|
|
|
4 |
1,794 |
UNIX for Beginners Questions & Answers |
|
|
|
9 |
1,835 |
UNIX for Beginners Questions & Answers |
|
|
|
5 |
5,321 |
UNIX for Beginners Questions & Answers |
|
|
|
6 |
1,862 |
Shell Programming and Scripting |
|
|
|
1 |
6,397 |
Shell Programming and Scripting |
|
|
|
3 |
1,462 |
Shell Programming and Scripting |
|
|
|
2 |
3,643 |
Shell Programming and Scripting |
|
|
|
4 |
1,422 |
UNIX for Beginners Questions & Answers |
|
|
|
3 |
2,319 |
Shell Programming and Scripting |
|
|
|
2 |
2,247 |
UNIX for Beginners Questions & Answers |
|
|
|
4 |
2,886 |
Shell Programming and Scripting |
|
|
|
4 |
3,466 |
Shell Programming and Scripting |
CSV2MIPE(1) User Contributed Perl Documentation CSV2MIPE(1)
NAME
csv2mipe.pl - Generates MIPE file based on 3 tab-delimited files
based on MIPE version v1.1
arguments: * tab-delimited file with PCR-level data
* tab-delimited file with SNP-level data
* tab-delimited file with assay-level data
Columns in file with PCR-level data:
pcr_id
pcr_modified (might be multiple, divided by semi-colon ";")
pcr_project (might be multiple, divided by semi-colon ";")
pcr_researcher (might be multiple, divided by semi-colon ";")
pcr_species
source_type
source_id
design_seq
primer1_oligo
primer1_seq
primer1_tm
primer2_oligo
primer2_seq
primer2_tm
design_remark (might be multiple, divided by semi-colon ";")
use_seq
use_revcomp
use_remark (might be multiple, divided by semi-colon ";")
pcr_remark (might be multiple, divided by semi-colon ";")
Columns in file with SNP-level data:
pcr_id
snp_id
snp_pos
snp_amb
snp_remark (might be multiple, divided by semi-colon ";")
Columns in file with assay-level data:
pcr_id
snp_id
assay_id
assay_type
assay_enzyme
assay_oligo
assay_specific
assay_tail
assay_strand
assay_remark (might be multiple, divided by semi-colon ";")
SYNOPSIS
csv2mipe.pl <pcr_file.csv> <snp_file.csv> <assay_file.csv>
ADDITIONAL INFO
See http://mipe.sourceforge.net
AUTHOR
Jan Aerts (jan.aerts@bbsrc.ac.uk)
perl v5.14.2 2005-07-20 CSV2MIPE(1)