Unix and Linux Discussions Tagged with multiple |
|
Thread / Thread Starter |
Last Post |
Replies |
Views |
Forum |
|
|
|
3 |
5,058 |
UNIX for Beginners Questions & Answers |
|
|
|
4 |
7,626 |
UNIX for Beginners Questions & Answers |
|
|
|
2 |
8,009 |
Shell Programming and Scripting |
|
|
|
6 |
2,581 |
UNIX for Beginners Questions & Answers |
|
|
|
1 |
12,929 |
Shell Programming and Scripting |
|
|
|
1 |
16,286 |
Shell Programming and Scripting |
|
|
|
2 |
3,104 |
UNIX for Beginners Questions & Answers |
|
|
|
2 |
3,974 |
UNIX for Beginners Questions & Answers |
|
|
|
8 |
9,956 |
Shell Programming and Scripting |
|
|
|
0 |
10,594 |
Shell Programming and Scripting |
|
|
|
6 |
3,366 |
UNIX for Beginners Questions & Answers |
|
|
|
4 |
3,692 |
UNIX for Beginners Questions & Answers |
|
|
|
2 |
3,368 |
UNIX for Beginners Questions & Answers |
|
|
|
3 |
5,649 |
Shell Programming and Scripting |
|
|
|
2 |
3,976 |
UNIX for Beginners Questions & Answers |
|
|
|
8 |
5,276 |
Shell Programming and Scripting |
|
|
|
2 |
4,517 |
Shell Programming and Scripting |
|
|
|
2 |
3,270 |
UNIX for Beginners Questions & Answers |
|
|
|
1 |
9,456 |
UNIX for Beginners Questions & Answers |
|
|
|
8 |
4,839 |
UNIX for Beginners Questions & Answers |
|
|
|
15 |
4,681 |
UNIX for Beginners Questions & Answers |
|
|
|
8 |
3,648 |
UNIX for Beginners Questions & Answers |
|
|
|
5 |
2,389 |
UNIX for Beginners Questions & Answers |
|
|
|
4 |
1,693 |
UNIX for Beginners Questions & Answers |
|
|
|
2 |
2,861 |
UNIX for Beginners Questions & Answers |
|
|
|
4 |
1,534 |
UNIX for Beginners Questions & Answers |
|
|
|
17 |
4,759 |
UNIX for Beginners Questions & Answers |
|
|
|
1 |
10,949 |
UNIX for Beginners Questions & Answers |
|
|
|
4 |
1,683 |
UNIX for Beginners Questions & Answers |
|
|
|
9 |
1,736 |
UNIX for Beginners Questions & Answers |
|
|
|
5 |
4,845 |
UNIX for Beginners Questions & Answers |
|
|
|
6 |
1,761 |
Shell Programming and Scripting |
|
|
|
1 |
6,165 |
Shell Programming and Scripting |
|
|
|
3 |
1,377 |
Shell Programming and Scripting |
|
|
|
2 |
3,460 |
Shell Programming and Scripting |
|
|
|
4 |
1,371 |
UNIX for Beginners Questions & Answers |
|
|
|
3 |
2,224 |
Shell Programming and Scripting |
|
|
|
2 |
2,070 |
UNIX for Beginners Questions & Answers |
|
|
|
4 |
2,675 |
Shell Programming and Scripting |
|
|
|
4 |
3,269 |
Shell Programming and Scripting |
CSV2MIPE(1) User Contributed Perl Documentation CSV2MIPE(1)
NAME
csv2mipe.pl - Generates MIPE file based on 3 tab-delimited files
based on MIPE version v1.1
arguments: * tab-delimited file with PCR-level data
* tab-delimited file with SNP-level data
* tab-delimited file with assay-level data
Columns in file with PCR-level data:
pcr_id
pcr_modified (might be multiple, divided by semi-colon ";")
pcr_project (might be multiple, divided by semi-colon ";")
pcr_researcher (might be multiple, divided by semi-colon ";")
pcr_species
source_type
source_id
design_seq
primer1_oligo
primer1_seq
primer1_tm
primer2_oligo
primer2_seq
primer2_tm
design_remark (might be multiple, divided by semi-colon ";")
use_seq
use_revcomp
use_remark (might be multiple, divided by semi-colon ";")
pcr_remark (might be multiple, divided by semi-colon ";")
Columns in file with SNP-level data:
pcr_id
snp_id
snp_pos
snp_amb
snp_remark (might be multiple, divided by semi-colon ";")
Columns in file with assay-level data:
pcr_id
snp_id
assay_id
assay_type
assay_enzyme
assay_oligo
assay_specific
assay_tail
assay_strand
assay_remark (might be multiple, divided by semi-colon ";")
SYNOPSIS
csv2mipe.pl <pcr_file.csv> <snp_file.csv> <assay_file.csv>
ADDITIONAL INFO
See http://mipe.sourceforge.net
AUTHOR
Jan Aerts (jan.aerts@bbsrc.ac.uk)
perl v5.14.2 2005-07-20 CSV2MIPE(1)